| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0278 |
|---|
| Symbol | |
|---|
| ID | 5171186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 262142 |
|---|
| End bp | 263473 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640562781 |
|---|
| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
|---|
| Protein accession | YP_001243883 |
|---|
| Protein GI | 148269423 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTTT ACATCAAGAC CTTCGGCTGT CAGATGAACG AGAACGACTC GGAAACGATG
GCCGGTCTTC TAATGAAGGA AGGGTTCACC CCCGCCTCGG CTCCCGAAGA GGCGGATGTG
GTCATCATAA ACACCTGTGC AGTGAGAAGA AAGTCTGAGG AGAAGGCCTA CAGCGAGCTC
GGTCAGATGC TGAAGATCAA AAGGAAAAGA AAGCTCGTTG TGGGAGTTGC GGGTTGTGTC
GCCGAAAAGG AAAGAGAGAA ACTCCTGGAG AGAGGAGCCG ACTTCGTCCT TGGAACCCGC
GCCGTCCTGA AAGTGACAGA GGCGGTGAAA AGGGCGCTTC AGGGGGAGAA GGTGGCGCTC
TTCGAAGACC ATCTCGACGA GTACACACAT GAGCTTCCAC GTATCAGATC CAGCAAGCAT
CACGCCTGGG TCACGATCAT ATTCGGCTGT GACAGATTCT GCACCTACTG TATCGTTCCG
TACACGCGCG GCAGGGAAAA GAGCAGACCG ATGGAGGATA TTCTGGAAGA GGTGAGAGAG
CTCGCGAAAC AGGGCTACCG CGAGGTGACC TTCCTCGGTC AGAACGTAGA CGCCTACGGA
AAAGACCTGA AGGACGGCTC TTCCCTCGCC AAACTCCTCG AAGAGGCCTC AAAGATAGAG
GGAATTGAAA GAATCTGGTT TCTCACTTCC TATCCGACGG ACTTCTCCGA CGAACTCATA
GAGGTGATCG CCAGAAATCC GAAGGTGGCA AAGTCCGTCC ACCTCCCCGT GCAGTCCGGA
AGCAACAGGA TACTGAAGCT CATGAACAGA AGTTACACGA AGGAAGAGTA CCTCGCCCTT
CTTGAGAGGA TCAGATCGAA GGTGCCGGAC GTTGCCATAA GCAGCGACAT CATCGTCGGT
TTTCCAACGG AGACGGAAGA AGACTTCATG GAGACGATCG ATCTTGTGGA GAAGGCGCAG
TTCGAACGCC TCAACCTCGC GATCTACTCT CCACGAAAAG GTACGGTGGC GTGGAAACAC
TACAAAGACG AGGTGCCCTA CGAAGAGAAA GTGAGGCGCA TGCAGTTTCT CATGAACCTC
CAAAAGAGGA TCAACAGAAA GCTGAACGAG CGCTACAAGG GAAAGACGGT GCGCGTCATC
GTGGAGGCTC AGGCAAAGAA CGGCCTCTTC TACGGCAGGG ACATCAGAAA CAAGATCATC
GCCTTCGAGG GTGAGGAGTG GATGATCGGC CGATTCGCCG ACGTGAAGAT CGAAAAGATC
ACGGCCGGTC CGCTCTACGG AAAGGTGGTA TGGATTGAAG AAACTCCTTC TCCTGTTTCT
ACTGATAAAT GA
|
|---|
| Protein sequence | MRFYIKTFGC QMNENDSETM AGLLMKEGFT PASAPEEADV VIINTCAVRR KSEEKAYSEL
GQMLKIKRKR KLVVGVAGCV AEKEREKLLE RGADFVLGTR AVLKVTEAVK RALQGEKVAL
FEDHLDEYTH ELPRIRSSKH HAWVTIIFGC DRFCTYCIVP YTRGREKSRP MEDILEEVRE
LAKQGYREVT FLGQNVDAYG KDLKDGSSLA KLLEEASKIE GIERIWFLTS YPTDFSDELI
EVIARNPKVA KSVHLPVQSG SNRILKLMNR SYTKEEYLAL LERIRSKVPD VAISSDIIVG
FPTETEEDFM ETIDLVEKAQ FERLNLAIYS PRKGTVAWKH YKDEVPYEEK VRRMQFLMNL
QKRINRKLNE RYKGKTVRVI VEAQAKNGLF YGRDIRNKII AFEGEEWMIG RFADVKIEKI
TAGPLYGKVV WIEETPSPVS TDK
|
|---|
| |