| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0090 |
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| Symbol | |
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| ID | 5169945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 81774 |
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| End bp | 83477 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640562589 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001243695 |
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| Protein GI | 148269235 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000779667 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAGAA GATACAGAAA GCTGGGAGAA ATTCTTGTGG AGAAAGGGTT CATAACCAGA
GAAGAGTTAG AGAGGGCTCT TGAAATTCAA AAAGAGGAAA AGAAGCCACT CGGGGAAGTT
TTAATTGAGA CTGGGTACAT CACGGAAGAT CAACTGCTGG AGGCTTTGAG TGAGCAGTAC
GGGGTTCCAA TCCTGAAGGA ACTACCAAAA AACATTCCTC TCAACGTGGT GGGCTCTATT
CCAAAGAACA TCATCGAATC TCTGCACGTC ATTCCTGTAG AAAAGAAGGA AGACGGAACT
CTCGTGGTGG TGACGGATAA CGGGACGAAC ATTCCGAGGA TCAAACAGGA AATTCGTTTT
CTCACGGGAA AAAATCCGGA GATTTATCTT GTAACGAGTA GAGATTTTTC TGTTTTGTAT
CAAACGTATG TTCTTGGTGT ACCACTCGAA CTTTTCGAGG AGCCTTACGT TGCTATAGAA
GAAACACCAG AACAGGTTGA GGAAGAAGAG GAAGAAGAAG AAAGGGAAAT AGAAGAAGCT
CCCATTGTAC GGCTTGTCAA CAATATCGTA AACCGTGCCA TAGAGATGGG AGCGAGTGAT
ATTCATATAG AACCGATGAA AAGAACCGTG AGAGTGAGAT TCAGAGTAGA TGGCGTTTTG
AGAAAGGTTC TTGAGTATCA AAAACTTCAA CACAACTCTG TTGTGGCACG CATCAAGATT
ATGAGCAGCC TTGATGTGTC GGAAAGAAGG CTTCCGCAGG ACGGGAAGTT TTACACAATA
AAAAGCGGTG AGCAGTACGA TTTTCGCGTG TCAACCATGC CTTCCACCTT CGGAGAGAAA
GTCGTGCTGA GAATATTGAA GGTATCCGAT GCGAACAGAC GTCTTGAGGA ACTTGGATAC
AGTGAATACA ACTTGAAACG AATACTATCA TTACTTGAAA AACCATACGG TATCATCCTG
GTCACTGGAC CAACGGGAAG CGGGAAATCC ACTACACTTG TCGCTATGAT AAATTATTTG
AAGAATGAAA GTGTGAACAT AGTAACAGCG GAAGACCCTG TGGAATACAC CATCGAAGGG
GTTACTCAGT GTCAGGTTTT CCCGGAAATA GGTCTCACGT TTGCTCGGTA CTTGAGAGCT
TTCCTCAGAC AGGACCCCGA CATCATCATG GTGGGTGAGA TCAGAGACAG AGAAACCGCA
CAGCTTGCGG TGGAAGCTTC CCTCACGGGA CACTTAGTTC TGAGTACACT TCACACCAAC
ACCGCCGCCG GTGCTGTTTC AAGGCTCATA GAAATGGGAA TAGACCCTCA CCTTCTTGGA
GCCTCTCTCA TCGGAGTCAT AGGTCAAAGG CTGGTGAGAA AGCTCTGTGA TGAGTGTAAA
ATGCCTGGAG AGGTTCGAGA TGAACAGGTA AAATCTTATT TCGAACAATT CTTTGGAAAG
GTACCAGATC AGATTTACTA TCCTTCAGAA GAGGGATGTC CTGCCTGTAG GGGAATGAGA
TACAGAGGAA GAATGGCTAT AGGAGAAGTT TTAATTGTGG ACGAAGAGTT GAGAGAACTG
ATCTCTTCCA GAGTGAGTGA AACAGAGATT GCAAAGCTCG CAGTGAAAAA AGGTATGCGC
ACCATGTTCC AGGATGCCCT CGAAAAGGTT CTTCTTGGGC AGACGAGCAT CGAAGAGGTT
TTCAGGGTGA CCACACCGCT ATGA
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| Protein sequence | MLRRYRKLGE ILVEKGFITR EELERALEIQ KEEKKPLGEV LIETGYITED QLLEALSEQY
GVPILKELPK NIPLNVVGSI PKNIIESLHV IPVEKKEDGT LVVVTDNGTN IPRIKQEIRF
LTGKNPEIYL VTSRDFSVLY QTYVLGVPLE LFEEPYVAIE ETPEQVEEEE EEEEREIEEA
PIVRLVNNIV NRAIEMGASD IHIEPMKRTV RVRFRVDGVL RKVLEYQKLQ HNSVVARIKI
MSSLDVSERR LPQDGKFYTI KSGEQYDFRV STMPSTFGEK VVLRILKVSD ANRRLEELGY
SEYNLKRILS LLEKPYGIIL VTGPTGSGKS TTLVAMINYL KNESVNIVTA EDPVEYTIEG
VTQCQVFPEI GLTFARYLRA FLRQDPDIIM VGEIRDRETA QLAVEASLTG HLVLSTLHTN
TAAGAVSRLI EMGIDPHLLG ASLIGVIGQR LVRKLCDECK MPGEVRDEQV KSYFEQFFGK
VPDQIYYPSE EGCPACRGMR YRGRMAIGEV LIVDEELREL ISSRVSETEI AKLAVKKGMR
TMFQDALEKV LLGQTSIEEV FRVTTPL
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