Gene Tpet_0047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_0047 
Symbol 
ID5169996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand+ 
Start bp42530 
End bp43654 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content47% 
IMG OID640562545 
Productsodium ion-translocating decarboxylase, beta subunit 
Protein accessionYP_001243652 
Protein GI148269192 
COG category[C] Energy production and conversion 
COG ID[COG1883] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit 
TIGRFAM ID[TIGR01109] sodium ion-translocating decarboxylase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTCGATTA TATCAGCCCT GGCAAATTTC TTTGCTCAAA CCGCGTTCCC ATATCTCACA 
TTTGGAAACA TAGCCATGTT CGCAGTGGCC ATTGCCCTGC TTTACGTAGC TATAGTGAAA 
CACTCAGAAC CTCTTCTTTT GATTCCCATA GCCTTTGGAA TCATTCTTGC GAACATACCC 
GTTGAAACCA CGGGAATATT GAACGAAGGC GGTTTTCTCT ACTACATAAA GAAAGGCCTT 
GACCTGGGAA TCTATCCTCC TCTCATCTTC CTCGGAATAG GCGCCCTCAC AGATTTTTCC 
TTCATGCTCT CGTACCCGAT CACCATCTTT CTCGGTGCGG CTGCACAGAT GGGAATATTT 
TTCACCTTTT TTGTGGCAAA GGTTCTAGGA TTTTCTCTGA AACAGGCGGC TTCCATCTCC 
ATCATAGGTG GTGCAGATGG GCCAACCGCC ATTTACATAA CGAACACACT ATCCCCAGAA 
TTGATCGCCC CCATAGCCAT ATCTGCTTAT TCCTACATCG CTCTCATTCC CATCCTCCAA 
CCCGTCGTTT CCAGAATTTT AGTAAGCAAA GAAGAACGAA AAATCAAAAT GAAACCACCA 
AGAAAGGTGA GCAGATTCGA GAGACTTTCA TTTCCGATAG TGATAACAAT AGCAACCGCT 
CTTCTGATTC CAAAGTCGCT CCCTCTGGTT GGATCTCTCA TGTTTGGAAA CCTCCTCAGA 
GAAGCGGGGA TTGTGAAAAG ACTCGTTGAA GCCGCCAGCA GGTACATACT CGACACGGTG 
ACGATCCTTC TCATGCTTTC AGTTGGGGCT TCTGCAAGAG CCGATGTTTT CTTGACTCCC 
CAAAGTCTGA TGATATTCTT TCTCGGAGCA GCCGCTTTCA TCGTGTCAAT GAGTTCTGGG 
ATTCTGTTTG CGAAACTCAT GAACCTGTTT TTGAAGGATA AAATAAACCC GCTCATAGGA 
GCGGCTGGTG TTTCTGCCGT ACCAGATTCT GCCAGAGTTG CACAGAAACT CGCTCAGGAA 
GAAGATCCAA GGAATCACAT ACTCATGCAC GCAATGGGAC CCAACGTGGC GGGAGTCATA 
GGCTCAGCCA CTGTGGCAGG AGTGTTTCTG ATGTTCCTCA GCTGA
 
Protein sequence
MSIISALANF FAQTAFPYLT FGNIAMFAVA IALLYVAIVK HSEPLLLIPI AFGIILANIP 
VETTGILNEG GFLYYIKKGL DLGIYPPLIF LGIGALTDFS FMLSYPITIF LGAAAQMGIF 
FTFFVAKVLG FSLKQAASIS IIGGADGPTA IYITNTLSPE LIAPIAISAY SYIALIPILQ 
PVVSRILVSK EERKIKMKPP RKVSRFERLS FPIVITIATA LLIPKSLPLV GSLMFGNLLR 
EAGIVKRLVE AASRYILDTV TILLMLSVGA SARADVFLTP QSLMIFFLGA AAFIVSMSSG 
ILFAKLMNLF LKDKINPLIG AAGVSAVPDS ARVAQKLAQE EDPRNHILMH AMGPNVAGVI 
GSATVAGVFL MFLS