Gene Tpet_0041 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_0041 
Symbol 
ID5170891 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand
Start bp35569 
End bp37500 
Gene Length1932 bp 
Protein Length643 aa 
Translation table11 
GC content46% 
IMG OID640562539 
Productglycosyl transferase family protein 
Protein accessionYP_001243646 
Protein GI148269186 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.12567e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAAT TCCTTTTATC CTTCTTCATA GCTTCACTTT TGACTTTTTT CTTACTGTGG 
GGTCTTTATT TCTTCTTCAC AAAAGACCTT CCTCCTCCCG AGGAGAAACT TGTGCCGACC
ATCAGACTGT TTTACAGTGA CGGAACTCCA CTGCTTGTCT CCAGGAATAT CTGGATAGAC
CTCTCCGACA TTCCAGAGAA ATTCGTTGAG ATACTCCTCA CCTCCGAGGA CGAGGAATTC
TACAAACATC CAGGATTCGA CCTCATGGGA TTTCTGAGGG CGTTGATCAT TGATATAAAG
ACACTGAGTT TCTCACAGGG CGGAAGCACC ATCACACAGC AACTCGCCAG GACGCTTTAT
CTTTCGATGG ACAAATCCAT CGTCAGGAAA TTGAAGGAAA TCTTCATATC CTTCTGGCTT
GAACGCATAA GAACCAAAGA TGAAATCCTC GAGATGTACA TAAACTCCGT CTATATGGGA
AACGGAATAT ACGGATTCCA AACGGCCTCT AAATTATACT TCGGAAAGGA CCTCTCTGAT
CTTTCGGTGC CGGAGATGTG TGTTCTTGTG GCTCTGATCA AATCCCCCGA GAACTTCAAT
CCTTTAAAAG ATCCCGAGAC CTCCCGAAAG AGGGCGAAGA TCGTCCTGGA CAGGTTACTG
ACGGAGAAAA GAATCAGCAC TCAGGAATAC GAGAATTACT CTGCGGAACT TTCAAAACTC
GAGTTTCACA CACAGCAGAT GAACGTGGAC GAGGAACTCT TCTGGAGGGT CGTGAGAGAA
GCCCAGGACC TTGGATTTTC GCTGAACGAA CTCAGGTACG GCTACAGGGT TTATCTCACA
TTGGATAAAG AACTTCAGAA AAAGGTGTAC AACACGGTCG AAGATGATAA GACAGCTTTT
GTTGGTGTGA AGGTGAAAAC AGGAGAGATA GTGGCTTATC GAGGAGTCGG CCTTCAATAC
GGAACCGGAT GGAGACAGAT AGGATCAGCC ATAAAGCCCC TGTATTATTA CTATGCCGTT
CTCAAGGGAA GAAACCCTTC CGATCTTCTT TTAGATCTTC CCCTGAAGAT CGGAGAGTGG
GAACCAGAAA ACTTCGATAA AACTTTCAAA GGATCAGTCA GTTTGAAGGA AGCGCTCGTC
GACTCGAGGA ACATTCCTTC TGTGTTACTT TACTCGTATT TGCAACCAGA GAGTGTGAGA
AATTTTATAA CGGAAGTATT GAAGCTGAGA GCCAGATATC CAGACGACCT CACCGCTTCC
CTCGGTACCG TGGAAACCGC CCCGGAAGAA GTTGTGAAGG TTTATTCAGC CATCTTCAAC
GGAGGAGTGG TTCTGGAACC GTACATCATC GACAGAATAG AAGACAGAAA CGGAAAGATC
GTCTACAGAG GATACCCAAA AGTCCTGTCC GTCGTTCCGT CTTTCGTGAG ATCCCCTCAG
GAAGCGAGTG AAATATTGAA GGGTATTTTA AAGGAAGTGG TTGAGAGAGG CACCGGTGTT
CGGGCAAAGA TTCCGGGAAA AGAAATCGCG GGAAAAACAG GAACGGCAGA AAAGAACGCC
TGGTTCATTG GAGGAGATGA TGATTACATC TTCGCGGTGG TGAAGGACGG GGAAAACCTT
CTTGGTGGAA GAGATTGCGC TCCAGTGTGG AAAGAAATAG CGAGCAGCTG GGAGAAGTTC
GAGGGAGATC TTCGATACAA AAGGCTGGAC AAACCGGGAA TTTCTCTTAT TGACGATAGA
ACAATAGAAT ATCTGGACTA CGCGAGACTG GTTGAACTGG TCAATGGGTC AAAACTTCCT
GTAAGCGTTC TGGTCAAAAT TCTACAGCTC ATGGGCTACA ATCATCAGAT TGAGTTCCTC
TCAAAATTGA ACAGCGTGGA TCCGATACTG TCCCTTGAAA TCTGGAAAAA GTTTTTGATG
GAAGGAGGTT GA
 
Protein sequence
MKKFLLSFFI ASLLTFFLLW GLYFFFTKDL PPPEEKLVPT IRLFYSDGTP LLVSRNIWID 
LSDIPEKFVE ILLTSEDEEF YKHPGFDLMG FLRALIIDIK TLSFSQGGST ITQQLARTLY
LSMDKSIVRK LKEIFISFWL ERIRTKDEIL EMYINSVYMG NGIYGFQTAS KLYFGKDLSD
LSVPEMCVLV ALIKSPENFN PLKDPETSRK RAKIVLDRLL TEKRISTQEY ENYSAELSKL
EFHTQQMNVD EELFWRVVRE AQDLGFSLNE LRYGYRVYLT LDKELQKKVY NTVEDDKTAF
VGVKVKTGEI VAYRGVGLQY GTGWRQIGSA IKPLYYYYAV LKGRNPSDLL LDLPLKIGEW
EPENFDKTFK GSVSLKEALV DSRNIPSVLL YSYLQPESVR NFITEVLKLR ARYPDDLTAS
LGTVETAPEE VVKVYSAIFN GGVVLEPYII DRIEDRNGKI VYRGYPKVLS VVPSFVRSPQ
EASEILKGIL KEVVERGTGV RAKIPGKEIA GKTGTAEKNA WFIGGDDDYI FAVVKDGENL
LGGRDCAPVW KEIASSWEKF EGDLRYKRLD KPGISLIDDR TIEYLDYARL VELVNGSKLP
VSVLVKILQL MGYNHQIEFL SKLNSVDPIL SLEIWKKFLM EGG