| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_7809 |
|---|
| Symbol | degQ |
|---|
| ID | 5150842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 8193643 |
|---|
| End bp | 8195064 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640562435 |
|---|
| Product | serine protease do-like precursor |
|---|
| Protein accession | YP_001243542 |
|---|
| Protein GI | 148258957 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0707872 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCCAGA AGCCCTCAAT GAAGGTGGCT GCGATGAGAA TGCACGTGCG AACTGTCCTT
CTGACCCTGT GCTTTGCCGC CGTGATCGGG AGTGCTCCCG CAGTCGCGCA ACAGGCAGCA
CTCGTTCCGT CGCAGCCAAC CCTCGCTCCG CTGGTCGAAA AAGTGGCGCC CGCGGTAGTC
AATATTTCCG TGCTGTCGCG GTCGCCGGTG CAGGATAATC CACTGCTCCG GGATCCGTTC
TTCCGTCGCT TCTTTGAGTT GCCGGATCCC GACAAGATTC CTCCGCAGAT GAGCGCGGGT
TCAGGCGTCA TCGTCGACGT CGGTAAGGGT TACGTGATCA CTAATCATCA CGTGGTCGAC
AAGGCGACCG AAATCGTCGT TACGTTGCGC GACCGCCGAC AGTTCAAGGC AAAGCTCATC
GGCAGCGATT CCGCAACCGA CATTGCGCTG GTGCAAATCG AAGCTGATCG GCTGACCCAG
CTCCCGCTTG CCGACTCCGA CAAGGTCCGA GTCGGAGATT ACGCCCTCGC CATCGGCAAC
CCCTTCGGCC TCGGGCAGAC CGTTACTATG GGCATTGTGA GCGCGCTCGG GCGTAGCGGC
ATCAATGCCG AAGGCTATGA GGACTTCATT CAGACCGACG CCTCGATCAA TCCGGGCAAT
TCCGGTGGGG CCCTGGTGTC CCTCAGTGGC GAACTGATCG GGATCAATAC GGCCATCATT
GCACCTTCCG GCGGAAATGT CGGAATCGGC TTTGCGGTAT CGAGCAACAT GGCTCGCTCC
GTCATGGATC AGCTCATTCG CTACGGCGAA GTCCAACGCG GTAGGCTCGG ATTCGTGGTG
CAGGATATCA CGCCGGATAT TGCGAAGGCG ATAGGCGTAC CCGCGACGGC TGAAGGCGCG
GTCGTCGTGC AGGTTGAGCC GGGTTCGGCG GCCGACAAAG CCGGCGTCAA GGCCGGAGAT
GTCGTGACCG CCCTCGGCGG GCGGCCGGTG CGCGGCGCAT CCGACCTGCG TAACCGCATT
GGACTGACCC GCGTCGGTGA GGACGTCGAG TTGAAAGTCC TCCGAAACGG CGCAGAGCGG
CGGCTGCGAG CGCGCGTCGA GCGAAGCTCG GCCTCTCCTC AAACGGCCGC TTTACAGACC
GACAAGGGCA CAACGATCCC GCGTTTACGC GGCGCGGTTG TTCGCGACAT CGGTCCGGGT
ATGCCTATGT ACGGCAAGGT CCAGGGCGTC GTGGTCGCCG AGGTTGAGGA CGGAAGCCCG
GCAGCCGCGC GCGGCTTGCG CGCCGGCGAT GTGATCGTCG CCGTCAACCG CAAACCCGTC
CGCAATGTGG CTGAATTCCA GGCCGCCCTG CAGGAGGCAG GCCGTGTCGC CGCGCTCGAT
GTGCTGCGTG GAGACATGTC GCTCTTTATC TTGATCACGT AG
|
|---|
| Protein sequence | MIQKPSMKVA AMRMHVRTVL LTLCFAAVIG SAPAVAQQAA LVPSQPTLAP LVEKVAPAVV
NISVLSRSPV QDNPLLRDPF FRRFFELPDP DKIPPQMSAG SGVIVDVGKG YVITNHHVVD
KATEIVVTLR DRRQFKAKLI GSDSATDIAL VQIEADRLTQ LPLADSDKVR VGDYALAIGN
PFGLGQTVTM GIVSALGRSG INAEGYEDFI QTDASINPGN SGGALVSLSG ELIGINTAII
APSGGNVGIG FAVSSNMARS VMDQLIRYGE VQRGRLGFVV QDITPDIAKA IGVPATAEGA
VVVQVEPGSA ADKAGVKAGD VVTALGGRPV RGASDLRNRI GLTRVGEDVE LKVLRNGAER
RLRARVERSS ASPQTAALQT DKGTTIPRLR GAVVRDIGPG MPMYGKVQGV VVAEVEDGSP
AAARGLRAGD VIVAVNRKPV RNVAEFQAAL QEAGRVAALD VLRGDMSLFI LIT
|
|---|
| |