| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_7638 |
|---|
| Symbol | |
|---|
| ID | 5150851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 8031794 |
|---|
| End bp | 8033299 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640562282 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_001243390 |
|---|
| Protein GI | 148258805 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGATCT GCGCCATGAC GGCGACGATC ATGCAGGCGC TCGACACCAC CATCGCCAAT
GTCGCCTTGC CCTACATGCA AGGCACGCTG TCAGCCTCGA CCGACCAGAT CAACTGGGTG
CTGACCTCCT ACATCGTCGC GGCCGCGATC ATGACCGCGC CGGTGGGCTG GATCGCCAAC
CGCTTCGGCC GCAAGCGCAC CTTCATCGTC TGCTCGGCCG GCTTCACTAT TGCTTCGGTC
ATGTGCGGTC TGGCCCAGGA CATCACCCAG ATGGTGCTGT TCCGCCTGTT GCAGGGCGTG
TTCGGTGCCT CGCTGGTGCC GCTGTCGCAG GCCGTGATGC TCGACTCCTA CGCGCTGCAT
GAGCGCGCCA AGGCGATGGC GATCTGGGGC ATGGGCGTGA TGCTCGGCCC GATCATGGGG
CCCTCGCTGG GCGCCTGGCT GACCGAGACT TATTCCTGGC ATTGGGTGTT CTTCGTCAAC
CTGCCGTTCG GCGCCGTGAC CGTGCTCGGC CTGATGGCCT TCATGGAGGA AACCAAGCCG
AATGCGGAAC TCACGTTCGA CTGGTTCGGC TTCGTCGCGC TCGCCATCGG CATCGGCTCG
CTGCAGATCG CGCTCGATCG CGGCGAGGAT CAAGGCTGGC TCGAGAGCAA CGAGATCATC
ATCGAGTTCA TCATTGCCGG CGTCGGCTTC TACTACTTCC TTGCCCATTC GCTGACCACG
CAACGGCCGT TCATCCAGTT CGCGCTGTTC AAGGACCGTA ATTTCGTCGG CGGCTGCGTG
TTCATGACCG TGATGGGCCT TGTGCTATTC TCGACCATGG CGCTGTCCTC GCCGTATCTG
CAGAACGTCA TCGGCTATCC GATCATCACC GCCGGCGTCC TCCTGGCGAC CCGTGGCTGC
GGCACGTTGG TCGCAATGAT GCTGGTCGGC CGGCTGTTGC GTTTTATCGA GGCGCGCACC
TTGATCGTGG TCGGACTGTC GCTGACGGCG TTGTCGCTGT TCCAGATGAC CGGCTGGACC
GACCACACCG GCGTGCCCGA GATCATCACC GTCAGCATCA TGCAGGGCTT TGGCTTCGGC
CTGGTGTTCG TGCCGCTGTC GACCGTGGCG TTCCTCACCT TGCCGGGCCA TTTGCGCACG
GATGGAACAT CAATGCTGAC TTTGGTGCGC AACGTCGCAA GCTCGATCGG GATCTCGATC
GCGATCGCGC AGCTGACGGA AGGAACACGC CGCAGCCACG CGATCCTGGT CGAGCACATC
AACCCGTTCA ACCACGCTCT GCAGATGCCG AACGTGGCGG GGCTGCTCAA CCTGTCGACC
GATGCCGGAC GCGCGATGGC CGATGCCATG GTCATGATGC AGGCCCAGAT CCTGGCGTTC
TCCCACGATT ACCAGCTGGT GATGACGTTC ATCCTGGTGT CGATCCCGCT CGCCGTCATG
ATCGGCTCGA CCCGCACCGC GCTCCGCGCC CAGTCCGCAC CGGCGGAGCA CGCTGTGATG
GAGTAG
|
|---|
| Protein sequence | MTICAMTATI MQALDTTIAN VALPYMQGTL SASTDQINWV LTSYIVAAAI MTAPVGWIAN
RFGRKRTFIV CSAGFTIASV MCGLAQDITQ MVLFRLLQGV FGASLVPLSQ AVMLDSYALH
ERAKAMAIWG MGVMLGPIMG PSLGAWLTET YSWHWVFFVN LPFGAVTVLG LMAFMEETKP
NAELTFDWFG FVALAIGIGS LQIALDRGED QGWLESNEII IEFIIAGVGF YYFLAHSLTT
QRPFIQFALF KDRNFVGGCV FMTVMGLVLF STMALSSPYL QNVIGYPIIT AGVLLATRGC
GTLVAMMLVG RLLRFIEART LIVVGLSLTA LSLFQMTGWT DHTGVPEIIT VSIMQGFGFG
LVFVPLSTVA FLTLPGHLRT DGTSMLTLVR NVASSIGISI AIAQLTEGTR RSHAILVEHI
NPFNHALQMP NVAGLLNLST DAGRAMADAM VMMQAQILAF SHDYQLVMTF ILVSIPLAVM
IGSTRTALRA QSAPAEHAVM E
|
|---|
| |