Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_7575 |
Symbol | xerD |
ID | 5155789 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 7958336 |
End bp | 7959262 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640562220 |
Product | tyrosine recombinase XerD subunit |
Protein accession | YP_001243328 |
Protein GI | 148258743 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.440547 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.271837 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCTGT TCCTCGACAT GATGGCCGCC GAACAGGGCG CTGGCCAGAA TACGCTGGAC GCCTATCGCC GCGACCTCAG CGATCTGTCC GAGTTTCTCG CTGGCAAGGC GAACAGCTTC ACCACCGCTG ACACCCAGGC GCTGCGCGAT TATCTCGCCG ATCTCGACAC GAGAGGCTTC AAATCGTCCA GCGTGGCGCG GCGGCTGTCG GCGATGCGGC ACCTGTTCCG CTTCCTGCTG AGCGAGCACA TCCGCAGCGA CGACCCCGCC GCCATCCTGT CCGGCCCCAA GCGCGGCCGT CCCCTGCCCA AGGTGCTCTC GATCGGCGAT GTCGACCGGA TGCTGACCCG CGCCAAGGAG CTGACCGAGA CCGCCGATGC GTCCCCGGCG CAACGGCTGC GGGCGCTGCG CCTGTATTGC CTGCTCGAAG TGCTCTACGC GACCGGCCTG CGCGTCTCCG AACTGGTGGC GCTGCCGCGC ACGGCGGCAC GCCATGACGC CCGCATGATC GTGGTGCGCG GCAAAGGCAA CAAGGAGCGG CTGGTGCCGC TGAACCAGGC CTCGCGCCAG GCCATGGCGG ATTATCTGGC GGCGCTGGAT GCGCTGAAGC CGGAGAAGAA GGCCAGCGCC ACCTTCGGCA AATGGCTGTT TCCCTCGTTC GGCGAGAGCG GCCATCTGAC CCGACAGCAT TTCGCGCGCG ACCTCAAGGA ATTGGCGGTG GCGAGCGGCC TGCCGGCCCG GCTCGTCTCA CCGCACGTGC TGCGCCACGC CTTCGCCAGC CATTTGCTGC ACAATGGCGC CGACCTGCGC ATCGTCCAGA CACTGCTCGG CCATACCGAC ATCTCGACCA CCCAGATCTA CACCCATGTG GTCGAGGAAC GGCTCAAGAG CCTGGTGCGC GACCTGCACC CGCTCGCCGA GACCTGA
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Protein sequence | MSLFLDMMAA EQGAGQNTLD AYRRDLSDLS EFLAGKANSF TTADTQALRD YLADLDTRGF KSSSVARRLS AMRHLFRFLL SEHIRSDDPA AILSGPKRGR PLPKVLSIGD VDRMLTRAKE LTETADASPA QRLRALRLYC LLEVLYATGL RVSELVALPR TAARHDARMI VVRGKGNKER LVPLNQASRQ AMADYLAALD ALKPEKKASA TFGKWLFPSF GESGHLTRQH FARDLKELAV ASGLPARLVS PHVLRHAFAS HLLHNGADLR IVQTLLGHTD ISTTQIYTHV VEERLKSLVR DLHPLAET
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