| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6955 |
|---|
| Symbol | appA |
|---|
| ID | 5148911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 7289608 |
|---|
| End bp | 7291401 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640561637 |
|---|
| Product | oligopeptide ABC transporter (substrate-binding protein) |
|---|
| Protein accession | YP_001242748 |
|---|
| Protein GI | 148258163 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAGC GTGATCTCCG TCGCCAGATC GCTGATGTCA AAACAGGGCG TCTGTCGCGA
CGCGAATTTG TGCAGCGGAT GATCGCCGTC GGGCTGACCG CGCCGATGGC TGGCGCAATG
CTCGCGCATT CCGGGATCGC GGTGGCCGCA GAAGCGATTC CCTATAAGCC GACCAAGGCC
GGCGGCGGCG GTCCGCTCAA GCTGCTGCTC TGGCAGGCGC CGACGCTGCT CAATCCGCAT
TTCGCCGTTG GCACGAAGGA CCAGGAGGCG TGCCGCTTGT TCTACGAGCC GCTCGCCGGC
TGGGACAAGG AAGGCAATCT GGTTCCGATC CTTGCCGCGG AGATCCCGAG CAAGGAGAAT
GGCGGTCTCG CCGCCGACGG TCTGTCCGTG ATCTGGAAGC TGAAGCCCGG CGTGAAATGG
CACGACGGCA AGCCGTTCAC GGCCGACGAT GTCGTCTTCA ACTGGGAATA CGCCAACAAT
CCCGAGACCT CGGCGGTCTC GATCGGCAGC TATAAGAACG TCAAGGCAGT CGAGAAGATC
GACGATCTCA CCGTCAAGCT GATCTTCCCG CAGCCGACGC CGTTCTGGGC CGATGCCTTC
GTGGCTTCGT TCGGCTGCAT CATTCCGAAG CATCTGTTCG GCGACTATAT CGGCGCGAAG
TCGCGCGAGG CGCCGGCCAA TCTGAAGCCG GTCGGCACCG GCCCCTATAT GTTCGTCGAC
TTCAAGCCGG GCGACACCGT CGCCGGCAAG CGCTTCCCGG ACTATCACGT GCCGACGCAG
CCTTATTTCG ACACGGTGGA GATCAAGGGC GGCGGCGATG CGGTGTCGGC GGCACGCGCG
GTGTTGCAAA CCGGCGAATA TGACTATGGC TATAATCTGC AGGTCGAGGA CGAGATCCTG
ACCAAGCTCG AGGCCGGCGG CCAGGGCAAG ACCGAACTGA CGCTGACCGG AAACATCGAA
TATATCGGCC TCAACGTCAC CGATCCCAAT GTCGAGGTCG ACGGCGAGCG CGCCAGCCTC
AAGACCAAGC ATCCGTTGTT CTCCGATCCG GAAGTGCGTA GGGCCATCAA CCTGCTGATC
GATCGCGCCT CGGTGCAGAA ATTCATCTAC GGCCGCGCCG GCGTCGCGAC GCCGAACTTC
CTCAACAATC CCGAGCGCTA CCGCTCCAAG AACAACAGCT TCGAGTTCTC GATCGAGAAG
GCCAACCAGA TCCTCGATGC CGCCGGCTGG AAGAAGGGCG CGTCCGGCAT CCGCGAGAAG
GACGGCAAGC CGCTCAAATT CGTGTTCCAG ACCTCGATCA ACGGGCCGCG TCAGAAGAAC
CAGGCGATCA TCAAGCAGGC CTGCCAGAAG GCGGGCATCG ATGTCGAGCT AAAGTCGGTG
GTCGCATCCG TGTTCTTCTC CTCGGACGTT GCCAATCCCG ATACTTACAC GCATTTCTAC
TGCGACATGC AGATGTATCA GACGACGATG CCGCAGGCCG ATCCGCAGTT CTTCATGAAT
CAGTTCACCT CCTGGGAGTG CGCCACCAAG GAGAACAAGT GGCAGGGCCG AAATGTCTGC
CGCTGGCAGA ACAAGGACTA TGACGAGACC TACAAGCTGG CCCAGAGCGA GCTCGATCCG
GTCAAGCGCG CCGCGCTGTT CATCAAGCTC AACGACCTCG TCGTGCGCGA CAATTACGTG
CTTCCGGAGA TCAACCGGCT CAACGCGATC GGCGTCAAGA ACGGCATGGT GCTGTACAAG
AGCGGCTGGG ACAACGACCT GGCGTTCATC GCATCCTGGT ACCGGGCGAG CTGA
|
|---|
| Protein sequence | MNERDLRRQI ADVKTGRLSR REFVQRMIAV GLTAPMAGAM LAHSGIAVAA EAIPYKPTKA
GGGGPLKLLL WQAPTLLNPH FAVGTKDQEA CRLFYEPLAG WDKEGNLVPI LAAEIPSKEN
GGLAADGLSV IWKLKPGVKW HDGKPFTADD VVFNWEYANN PETSAVSIGS YKNVKAVEKI
DDLTVKLIFP QPTPFWADAF VASFGCIIPK HLFGDYIGAK SREAPANLKP VGTGPYMFVD
FKPGDTVAGK RFPDYHVPTQ PYFDTVEIKG GGDAVSAARA VLQTGEYDYG YNLQVEDEIL
TKLEAGGQGK TELTLTGNIE YIGLNVTDPN VEVDGERASL KTKHPLFSDP EVRRAINLLI
DRASVQKFIY GRAGVATPNF LNNPERYRSK NNSFEFSIEK ANQILDAAGW KKGASGIREK
DGKPLKFVFQ TSINGPRQKN QAIIKQACQK AGIDVELKSV VASVFFSSDV ANPDTYTHFY
CDMQMYQTTM PQADPQFFMN QFTSWECATK ENKWQGRNVC RWQNKDYDET YKLAQSELDP
VKRAALFIKL NDLVVRDNYV LPEINRLNAI GVKNGMVLYK SGWDNDLAFI ASWYRAS
|
|---|
| |