Gene BBta_6935 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_6935 
Symbol 
ID5150664 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp7266314 
End bp7267447 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content70% 
IMG OID640561617 
ProductAcrB/AcrD/AcrF family mulitdrug efflux protein 
Protein accessionYP_001242728 
Protein GI148258143 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.532768 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.737034 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
CTGGCCGGCT GTAACGAAGC TACGCAGGCT CAGGCGTCCG CCAACGAACA GGCCGTCGTT 
CCCGACGTGG GCATCGTCAC CGTCGAGCAG AAGCCGCGCG CGATCGTGCG CGAGCTGCCC
GGCCGCATTG CGCCGACCCG CGTCTCCGAC GTTCGGCCGC GGGTGTCGGG CATCGTCGTC
GAGCGGCTGT TCCGCCAGGG CAGCGAGGTC AGGGCAGGCG ATCCGCTGTA CCGGATCGAC
CCGAAGCCCT TCGAGGTGGA AATCATGTCG GGCCGTGCGG CGCTGGCGAA GGCCGAGGCG
GTGCATGAGC GCGCCGTGCA GCAGGCGCGC AGGATCAACC TGCTGTTCAA GGAGCGCGCC
GCGCCCGAGG TCGAGCATGA GAAGGCGATC GCGAGCGAGC GCGAGGCGGC GGCCGATGTC
GAGGCCCGCA AGGCGGATCT CGCGCGTGCC CAGCTCAATC TCGACTACGC GACGGTGCGT
GCGCCGATCG ACGGCATCGT CGGCGCCGCG CAGGTCAGCG AAGGCGCCAT CGCGGTCCAG
AACGAGACCT CGCTCGCGAC CATCCAGCAG CTCGATCCGA TCTATGCCGA CTTCACCCAG
TCGGTCAGCG AGCTCAACCG CCTGCGCCGC GCCTTCGAGT CCGGCGATCT CGACCAGATC
GCGCCGGACG CGATCAAGGT CCGGCTCGTG CTCGATGACG GCACGTCGTA TTCGATTCCG
GGCAAGCTGC TGTTCTCCGA TGCCAAGGTC GACGCTGCCA CCGGCCAGGT CACGTTGCGG
GGCGAGTTCG CCAATCCGAA ACGCGAGCTG CTGCCGGGCA TGTATGTGCG CGTGCGTATC
GAGCAGGGCA TCGACAGCGA TTCCGTCGCG GTGCCGCAGC AGGCGGTGCA GCGGAACGCC
GCCGGCGGGT CCGAGGTCTA CGTCATCCGC GAGGACAACC GCGCGATCGC GCGGCCGATC
CGCACGGGTC CGATCCAGGA CGGTCTGGTG CTGGTTACCG ACGGCCTCAG GGCCGGCGAC
CGGGTGGTGG TCGACGGCTT CCAGAAATTC GCCGCCGGCG ACAAGGTGGC CCCGCAGGCC
TGGACCGAGG CCAGCGCCGC GGCTCAGATC GAGCCGAACG CGACGCCGCG TTAG
 
Protein sequence
MAGCNEATQA QASANEQAVV PDVGIVTVEQ KPRAIVRELP GRIAPTRVSD VRPRVSGIVV 
ERLFRQGSEV RAGDPLYRID PKPFEVEIMS GRAALAKAEA VHERAVQQAR RINLLFKERA
APEVEHEKAI ASEREAAADV EARKADLARA QLNLDYATVR APIDGIVGAA QVSEGAIAVQ
NETSLATIQQ LDPIYADFTQ SVSELNRLRR AFESGDLDQI APDAIKVRLV LDDGTSYSIP
GKLLFSDAKV DAATGQVTLR GEFANPKREL LPGMYVRVRI EQGIDSDSVA VPQQAVQRNA
AGGSEVYVIR EDNRAIARPI RTGPIQDGLV LVTDGLRAGD RVVVDGFQKF AAGDKVAPQA
WTEASAAAQI EPNATPR