| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6880 |
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| Symbol | |
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| ID | 5151349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 7206601 |
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| End bp | 7208934 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640561562 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001242673 |
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| Protein GI | 148258088 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.296113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00757929 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCAGGTCA TCAAGCAGAG CGATGAAATC GACCAGCGAT TGCAGTCGTC AATCAATGCT
GCCCTGGTCG ATTCGCTATT CCAGAATCCG CAGTCGCTGG GCGCGGGTGC GGCCCTCGTC
GCGATGGCCG CTGCGCTCAC CGCGACCAAG ACAGGGCTGA CATCGCTCTG GTGCTGCGTC
GGGCTGCTCG TCCTCAGCGG CGGATGGCGC ACGTTCGACA TGTACTGCTA CCGCGTCGGC
CGGCTTCATT CAACGCCCGC TTTGGCGCAG AAGTGGGAGA TGCGCTATCA GTTCGGCGCC
ATTCTCTACG CGGCTGCGCT CGGCCTGTGG TGCGCCGTCG GCCTGCTGGC GACGACCGAT
ACTGTCGTCC ACATGATCTC GATCGTGGTC ACCGTCGGCT ACATCGCGGG CGGTGTCGGC
CGGACCTTCG GAAGGCCCTG GATCTACCAT CTCCAGATCG CATTGTCCTT CGGCATCACG
TCGATCGCAC TGATCCTCCA CGGCACGATC TACTATATCG GCCTGGCGTT CGTCGCCGCC
GGATTCCTGT TTGCGCTGCG CGAGATCACC AAGAACCTGC AAAAGATCTT CGTCGATGCG
CTGACCGCCC GCGACCGCGA GGCGGCGCTG GCCAACCAGT TCGATACTGC GCTGAACAAC
ATGCCGCATG GCCTCTGCAT GTTTCGCCCG GACGGGCGTC TTGCCGTCAT GAATCACCGG
TTCGGCGAGA TGATGAGCCT GCCGGAGGAC ATCCTGCAGT CCGGCGGCAC CGCCGCCGAT
ATCATCAATG CCTGCGTGCT CTCCGGATCG ATTTCGGCCG CCAGCGGCAG GCTGATCCTG
TCGGAGATCG AGAACACCAA GACCCACAAT ATCATCACCA GCGATCCGGA CATCATGCGT
GACCGGTCGC TGTCCTGGAC GTTCCAGCCG ATGGCGGATG GCGGCGCCGT GGTGCTGCTC
GAAGACATCA CGGAGCGCCG CCATGCGGAG GCGCGGATCT CGCATCTCGC CCGCTATGAC
GAGCTCACGA CGCTGCCCAA CCGCGTCAGC TTCCGCGACG AAATCGAGCG GCTGCTGAGA
ATCCCGCCGC GCCAGGGTGA GCTCTCGGCG CTGCTGTTCG TCGACCTCGA TCGCTTCAAA
CAGGTCAACG ACACGCTCGG CCACCCCTGC GGCGATCAGC TGCTCTGCGC CGTGTCCGAG
CGGCTGCGTG ACATGCTGCG GCCGGAGGAT TTCGTCGCCC GCTTCGGCGG CGATGAGTTC
GTGGTATTCC AGCGCAACAT CCGCTCCAAT GACGACGCCG CGGTGTTGGC GCGGCGCATC
GTCGACCAGC TGAGCGAGCG CTACAAGATC GACAATCATC TGGTCGAGAT CGGCGCCAGC
GTCGGCATCG CCATGACCGC GCCGGGGATC AGCGCCGATA CGCTGCTGAA GAACGCCGAC
ATGGCGCTCT ATCGCGCCAA GGCCGAAGGA CGCGGCACGT TCTGCTTCTT CCGCGACGAG
CTGGCCCAGA CCGTGGAGGC GCGCCGCATC CTCGAGCTCG ACCTGCGCAA GGCGCTGGCC
AACGAGGAAT TCGAGCTGTT CTATCAGCCG CTGGTCAATC TCAAATCCGG CAAGATCTCG
ACCTGCGAGG CGCTGCTGCG CTGGAACCAT CCGGTGCGCG GGACCGTGTC TCCGGTCGAC
ATCATTCCCG TCGCGGAAGA CATGGGCCTG ATCGTGGATC TCGGCCGGTG GATCCTGCGC
AAGGCCTGCC TCGAATGCAT GAAGTGGCCG GACGCCGTCA GCGTCGCCGT CAACTTCTCT
CCGCAGCAGT TCCATCAGCG CGACGTCCTG AGCGAGGTCC GCTACGCCCT CGAAGTCTCC
GGCCTCCCGC CGCATCGCCT CGAGATCGAG ATCACCGAAT CCTCGCTGTT GCGCAACACC
CAGCTGACCC ATGATGTGCT GTCGCAGCTG CACATGCTCG GCGTCCGGAT CTCGCTGGAC
GATTTCGGCA CCGGCTATTC GAGCCTCAGC TATCTGCATA ATTTCCCGCT CGAGAAGGTG
AAGATCGATC GCTCCTTCCT CGAGGGCATC GATACCGACC GCCCGTTGAC CTTGCTGCGC
GGTGTCGCCC GGCTGTCTGC CGATCTCGGC ATGTCGGTTG TGGTCGAGGG CATCGAAACC
AACGAGCAGC TCGAGCTGGT CAGTGCCGAT GGCACGGTGA CCGAGGCGCA AGGCTATCTG
TTCAGCCGCC CCGTGCCTGC CATACGCATC CGCCAGCTCC TGAACGCCTC GCATGGCCGG
CGAATGACCG ACGAGGCGAT CACTCCCCTT AACGGAATCC GCTCGATCGC CTGA
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| Protein sequence | MQVIKQSDEI DQRLQSSINA ALVDSLFQNP QSLGAGAALV AMAAALTATK TGLTSLWCCV
GLLVLSGGWR TFDMYCYRVG RLHSTPALAQ KWEMRYQFGA ILYAAALGLW CAVGLLATTD
TVVHMISIVV TVGYIAGGVG RTFGRPWIYH LQIALSFGIT SIALILHGTI YYIGLAFVAA
GFLFALREIT KNLQKIFVDA LTARDREAAL ANQFDTALNN MPHGLCMFRP DGRLAVMNHR
FGEMMSLPED ILQSGGTAAD IINACVLSGS ISAASGRLIL SEIENTKTHN IITSDPDIMR
DRSLSWTFQP MADGGAVVLL EDITERRHAE ARISHLARYD ELTTLPNRVS FRDEIERLLR
IPPRQGELSA LLFVDLDRFK QVNDTLGHPC GDQLLCAVSE RLRDMLRPED FVARFGGDEF
VVFQRNIRSN DDAAVLARRI VDQLSERYKI DNHLVEIGAS VGIAMTAPGI SADTLLKNAD
MALYRAKAEG RGTFCFFRDE LAQTVEARRI LELDLRKALA NEEFELFYQP LVNLKSGKIS
TCEALLRWNH PVRGTVSPVD IIPVAEDMGL IVDLGRWILR KACLECMKWP DAVSVAVNFS
PQQFHQRDVL SEVRYALEVS GLPPHRLEIE ITESSLLRNT QLTHDVLSQL HMLGVRISLD
DFGTGYSSLS YLHNFPLEKV KIDRSFLEGI DTDRPLTLLR GVARLSADLG MSVVVEGIET
NEQLELVSAD GTVTEAQGYL FSRPVPAIRI RQLLNASHGR RMTDEAITPL NGIRSIA
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