| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6840 |
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| Symbol | |
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| ID | 5152569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 7165897 |
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| End bp | 7168605 |
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| Gene Length | 2709 bp |
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| Protein Length | 902 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640561522 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001242633 |
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| Protein GI | 148258048 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGGCA AGAATTGGCA GGCGAGCAGC AGAAATGCGT TTCCTGCGCG TGTCGTTGCG
GCCGCGATGG CCGTCATGGC CGCGTTGGAA GCTGCATCGC CGGCGTGTGC CTGGGCCGCT
CCGGCCGATT TCTCGCCCAG CAGCTTTGTG GGGGTCGTCG AGCCCGACGT GCTCTGGAAG
GTGCTGATCG CCGGAATCGT GGTCTGCGCC TTTCTCGCCT CGGTGGTGAT CTGGATCCAT
TCGAGCTTGC GGCGAACCAA GCGTGCGCAA CTGCGCCGTA ACGCCTTCGT CAGCTCCGCG
CTGAACAATC TCAGCCAGGG TCTGATGCTG ACGGACTCCG CCAATCGCGT CGTCTTCTAT
AACCGTCGGT TTCTCGAGAT CTACGGCATG ACCAGGGCGG ACATCCCGCC CGGCTGTACC
GGGCGAGATC TTGTCGAGCT TCGGCGTCAG CGCGGCCTGC TCGCGCTATC CGTCGAGGAC
TACGCCCGGA AGGCGCGCGA GCCGGACGGG TGTCTGACGG ACCTGCCCGA CGGACGCGCG
GTCCGCGCGA AGATCTTTCG GCTGCCGACC GGGGGATCGA TCGGCATCCA CGAGGACTGC
ACGGTGCAGC GCCGGCTGGA GGACGAGCTC GCCTCGACCA AGCAGTTCCT CGAATCGGTG
GTGGATCAGG TCCCGGCCTG CGTTGTCGCC AAGAACATCG AGGACGGCCG TTACATTTTC
GCCAACCGCG CCTTCGAGCG GTTCGCGCGG GTGTCGCGGG ACCGGATCAT TGGAAAGCGC
CCCGGCGACC TGTTCGGCGA GGAGACCGCC GCCAACATCA CCCAGGCCGA CCGCGCAGCG
ATGCTGGCGC CGGGCACCAC CTATCGCAGC GAGCTCGTGG TCCAGCGCGG CGACGAGAAG
CGAATCCTGG AATCCCACCG GGTCGTCGCG CGCAATGACA AGAACGAACC GCAGTTCCTC
ATCGCCTTGT TCGATGATGC GACCGAGCGG CGCTCGCTCA GCCAGGAGCT GGAAAGCACC
AAGAAGTTCC TGGAGCTCAT CGTCGACAAC ATCCCGGTCT CGCTGATCGT CGAGAGTGCC
GGCGATGGCC GCTACCTGCT CGCCAACCGC AGCGCGGAGA TCATCCTCAA CCGCAAGCGG
GAGGATGCAA CCGGCCTGAC CACGGCCGAC ATCTTCAATC CGCGCGAGGC CAGGCTGATC
ATGGCGCGCG ACGAAGCCGC CATCAAGAAG CGCGGGGTTT TGACCGAGGA ACATCCGATC
TCGACCAAGG ACGGCCTGCG CCTGTTCCTG ACCCGGCGGG CGACCGTGCT CGGCGACGGT
GGCGAGCCGC AATATCTGAT CAAAACCTAT GAGGACGTGA CCGACCGGCG CCAGACCGAA
TCGCGGATGG CGCATATGGC CTATCATGAC GGCCTCACCG ACCTGCCGAA CCGCGCGGCG
TTCCTCCAGG CCTTGAGCCA GATGATCGAA GCTTGCGCGG ATACCGGCGA GGAATTCGCC
GTCTTGAATG TCGATCTCAA GGGGCTGAAG GACGTCAATG ATGTGTTCGG CCACGCCATC
GGTGACAAGC TGCTGATCGA AGTCGCTCGC CGCGTGCACA CCGTGGCAAG AGGCGGCGTG
GTTGCACGGC TCTCCGGCGA CGAGTTCGGC TTGATCATCG ACGGCAAGCA ACCGGAGACA
GGCAGGGCGC TCGCTGAACA ATTGGCCGCA GCCATCGCCG TCGAATTTCA GATCGAAGGC
AAATCAATTC GCACCGCGCT GACGACCGGC ATCTCGGTGT TCCCGCATAA CGGCCCGGAT
CCGGCCTCGC TGCTCGCGAA TGCCGGTGCA GCCCTGTTCC GCGCCAAGGC CAGGTCGCGT
GGCAGCATCA CCTTCTACGA ACCCGAGATG GACCAGCAGA TCCGCGACCG CCGCGTTCTG
CATCAGGAGC TGTCGGTCGC GATCAAGAAC GGCGAACTGT CACTGTACTT CCAGCCGCAG
GCGAGCTCCG GCCGGACCGT GGATTGCAGC GAGATCATCG GTTTCGAGGC GCTGGCCCGC
TGGCACCACC CCGTGCGTGG CTTCGTGCCG CCCAGCGACT TCATCCCGCT TGCGGAAGAG
AGCGGAATGA TCGTCGAGAT GGGCGAGTGG ATCCTGCGTG AGGCCTGCCG CGAGGCGGCG
TCCTGGCCAA AGCCGCTGCA GGTCGCGGTC AACCTGTCGC CCGCCCAGTT CGTCCATGGC
GATCTCGTCG CTCTGGTCCA CTCCATCCTG CTGGAGACGG GGCTGTCGCC CGGCCGGCTC
GAGCTCGAAA TCACCGAGGG CGTGCTGATC GAGGATTTCG ACCGCGGCGT CGCGCTGCTG
CGCCGGTTGA AGGCGCTCGG TGTTCGCGTC TCGATGGACG ATTTTGGCAG CGGTTACTCG
TCGCTGAGCT ATCTGCAGGC CTTCCCGTTC GACAAGATCA AGATCGATCG CGCCTTTGTC
ATGAATCTCG GCCGCAATCC GCAATCCGCG GCGATCATCC GTGCGGTGAT CGGGCTTGGT
CACGGCATGA ACATGTCGAT CGTGGCCGAA GGCGTCGAGA CGCCGGAGCA ACTCGGCTTC
CTCGCCGAGC AGGGCTGCGA TTCCGTTCAA GGCTATCTGC TGGGCAAGCC ATTGCCGATC
GACAAATATG ACGGCATCGT CGGCCGCGCG CATGTCGACG CCATCACGGC GGTTCGCAAG
ACCGGATGA
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| Protein sequence | MAGKNWQASS RNAFPARVVA AAMAVMAALE AASPACAWAA PADFSPSSFV GVVEPDVLWK
VLIAGIVVCA FLASVVIWIH SSLRRTKRAQ LRRNAFVSSA LNNLSQGLML TDSANRVVFY
NRRFLEIYGM TRADIPPGCT GRDLVELRRQ RGLLALSVED YARKAREPDG CLTDLPDGRA
VRAKIFRLPT GGSIGIHEDC TVQRRLEDEL ASTKQFLESV VDQVPACVVA KNIEDGRYIF
ANRAFERFAR VSRDRIIGKR PGDLFGEETA ANITQADRAA MLAPGTTYRS ELVVQRGDEK
RILESHRVVA RNDKNEPQFL IALFDDATER RSLSQELEST KKFLELIVDN IPVSLIVESA
GDGRYLLANR SAEIILNRKR EDATGLTTAD IFNPREARLI MARDEAAIKK RGVLTEEHPI
STKDGLRLFL TRRATVLGDG GEPQYLIKTY EDVTDRRQTE SRMAHMAYHD GLTDLPNRAA
FLQALSQMIE ACADTGEEFA VLNVDLKGLK DVNDVFGHAI GDKLLIEVAR RVHTVARGGV
VARLSGDEFG LIIDGKQPET GRALAEQLAA AIAVEFQIEG KSIRTALTTG ISVFPHNGPD
PASLLANAGA ALFRAKARSR GSITFYEPEM DQQIRDRRVL HQELSVAIKN GELSLYFQPQ
ASSGRTVDCS EIIGFEALAR WHHPVRGFVP PSDFIPLAEE SGMIVEMGEW ILREACREAA
SWPKPLQVAV NLSPAQFVHG DLVALVHSIL LETGLSPGRL ELEITEGVLI EDFDRGVALL
RRLKALGVRV SMDDFGSGYS SLSYLQAFPF DKIKIDRAFV MNLGRNPQSA AIIRAVIGLG
HGMNMSIVAE GVETPEQLGF LAEQGCDSVQ GYLLGKPLPI DKYDGIVGRA HVDAITAVRK
TG
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