| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6488 |
|---|
| Symbol | gudD |
|---|
| ID | 5156243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 6761778 |
|---|
| End bp | 6763133 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640561187 |
|---|
| Product | (D)-glucarate dehydratase 1 |
|---|
| Protein accession | YP_001242303 |
|---|
| Protein GI | 148257718 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | [TIGR03247] glucarate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCACG AAGCCACCAG CACCGGGATT TCCGGCGCGC CGGTCGTCAT CGGCATGGAG
GTCATTCCGG TCGCCGGGCG TGACAGCATG CTGCTCAACC TCTCAGGCGC GCATGGGCCG
TTCTTCACCC GCAACCTCGT CATCCTCACT GACAATGCCG GCCACACCGG CGTCGGCGAG
GTGCCGGGCG GCGAGAAGAT CCGGCAGACG CTGGAGGATG CCAAGAGCCT GATCGTCGGC
CAGAGCATCG GCGCCTGCAA CACGATCCTG GCGTCGATGC GCACCGCCTT CGCCGACCGC
GACGCCGGCG GCCGCGGCAA GCAGACATTC GATCTGCGCG TGATGATCCA CGCTGTCACC
GCGGTCGAAT CCGCGCTGCT CGACCTCTTG GGCCAGCATC TCGGCCTGCC GGTCGCGGCG
CTGCTCGGCG AAGGCCAGCA GCGGACCTCG GTCGAGGCGC TCGGCTATCT CTTCTTCATC
GGCGATCGCA AGAAGACCGA CCTGCCCTAC GCGACGGGCG AAGGCGAGCG TGATGGCTGG
TTCACCCTGC GCCACCATGA GGCGATGACG CCCGAGGCCG TGGTGCGGCT CGCCGAGGCC
ACGCATGACG CCTACGGCTT CGCCGACTTC AAGCTGAAGG GCGGCGTGCT CAAGGGCGAG
GCCGAGATCG AGGCGGTGAC GGCGATCGCC AAGCGCTTTC CGCAGGCGCG CGTCACGCTC
GACCCGAACG GCGCCTGGTC GCTCGATGAG GCGATCCGGC TGTGCAAGGA CATGCACGGC
ATCCTCGCTT ACGCCGAGGA CCCATGCGGC GCCGAAGCCG GCTTCTCCGG CCGCGAGATC
ATGGCCGAGT TCCGCCGCGC CACCGGCCTG CCGACCGCGA CCAACATGAT CGCCACCGAC
TGGCGGCAGC TCAGCCATGC GCTGCGGCTG GGTGCGGTCG ACATCCCCCT GGCCGATCCC
CATTTCTGGA CCCTGCAGGG CTCGGTGCGC GTCGCCCAGA CCTGCCGCGA CAACGGCCTC
ACCTGGGGTT CACACTCCAA CAACCATTTC GACATTTCGC TGGCGATGTT CACCCATGTG
GCCGCCGCCG CCCCGGGCAA GGTCACCGCG ATCGACACCC ATTGGATCTG GCAGGACGGC
CAGGCACTGA CGAAAGCGCC GCTGCAGATC AAGGGCGGCC GGATCGCCGT GCCCGAGCAG
CCCGGGCTCG GCATCGAGGT CGACCGCGGC GCCATCGAAA AGGCTCATGC TCTGTACAAG
AGCCACGGGC TCGGCGCACG CGACGACGCC GTCGCAATGC AGTATCTGAT CCCCGGCTGG
ACCTTCGACG ACAAGCGCCC CTGTCTCGTG CGATGA
|
|---|
| Protein sequence | MSHEATSTGI SGAPVVIGME VIPVAGRDSM LLNLSGAHGP FFTRNLVILT DNAGHTGVGE
VPGGEKIRQT LEDAKSLIVG QSIGACNTIL ASMRTAFADR DAGGRGKQTF DLRVMIHAVT
AVESALLDLL GQHLGLPVAA LLGEGQQRTS VEALGYLFFI GDRKKTDLPY ATGEGERDGW
FTLRHHEAMT PEAVVRLAEA THDAYGFADF KLKGGVLKGE AEIEAVTAIA KRFPQARVTL
DPNGAWSLDE AIRLCKDMHG ILAYAEDPCG AEAGFSGREI MAEFRRATGL PTATNMIATD
WRQLSHALRL GAVDIPLADP HFWTLQGSVR VAQTCRDNGL TWGSHSNNHF DISLAMFTHV
AAAAPGKVTA IDTHWIWQDG QALTKAPLQI KGGRIAVPEQ PGLGIEVDRG AIEKAHALYK
SHGLGARDDA VAMQYLIPGW TFDDKRPCLV R
|
|---|
| |