Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_6080 |
Symbol | |
ID | 5154758 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 6305969 |
End bp | 6308041 |
Gene Length | 2073 bp |
Protein Length | 690 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640560794 |
Product | putative TonB-dependent receptor |
Protein accession | YP_001241913 |
Protein GI | 148257328 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.341343 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTCTCGT TCCTATCCGT CGCCCGGCGC CATCGCGCCG GCCTGTTGTC GTCGACCGTC CTGGTCTCCA TCGCGACGTT CGGCGCGGCT CCGGCCACCG CCCAGCAATC CGCCTCCCCC GACCTGCTGC CGCCGGTCGA GGTCGATCCG CCCCGCAAGC CGGCCGCTCC GAAGTCGGCC TTGCCGCGTG GGGCGCAGAC GCCGCGCGCA CGCGCATCGC AGCCGGCGGC CACGCAGAGC GCCGCCGCCA AGGCCAACGC ACAACTCGTC GTCAGCCCGA CCGGCATCGC AACCCCCGCT GCCCATGTGG CGAACGCGAT CACCGTCGTT ACGGCCAAGG ACATCGCCAC ACAACAGGCC CGCAGCGTGC CCGACATCCT CGCCGCCATT CCCGGCTTGA ACGTCGTGCA GACCGGCGGC GCTGGCGGGC AGAGCTCGGT CTTCACCCGC GGGACAAACG CGAATCACAC CAAGATCCTG ATCGACGGCA TCGATGTCGG CGACGCCACC AATGCCAATG GTGCGTTCGA CTTCGCCCAT CTGCTGACCT CGGACATCCA GCAGTTCGAG GTGCTGAGGG GGCCGCAGAG CGGCCTCTAT GGCTCGGATG CGATCGGTGG CGTCATCTCG GTGATCACGC GCAAGGGCGA CGGCCCGGCG CGGGCAACCG CTTCGATCGA GACCGGCACG TATCAGACCT TCAACCAGTC GGCCGGCGTC AGCGGGTCGC AGGACAATGT GAACTACGCG ATCAATGTCG CGCATCTCCA TGCCGGCGAC ATTCCGGTCA CGCCACAGCA ATTGCTGCCG GCGGGGCAGA AGGCGATCGG CAACGCCTAT GACAACGTCA CCGCCTCGAC CAAATTCGGC GTCGACCTCA ACGAGGCCTG GTCGCTGAAT TCGGTGTTGC GCTATACGGA CGCGACGCTG CTGTTCACCG GCGACGGCGG CTTTCCCAGC GTCCCGAACG CGGCCCAGAG CAGCCATGCC GTGCAGCAGT TCGCCACGCG CGAGGAAGCC GTGTGGTCGC TGCTCGACGG CCGCATCAAA AACTATTTCG TTATCAACTA CGTCAACAAC CGGACGTCCG ATCTCACCGC GGGCAATCCC CTCGCCGCAA TCTCGACCGG CGAGCGCATC AAATATGATT GGCACGCGGT CACCGAACTC GCTCCGCACA ACAATTTCAT CGTCGGGCTC GAGCAGCAGA CCGACCGTCT CCAGACCACG GGTCTGACGG CCGAGAACGG CAACAGAGCC GGCTTCGTCG AGGTGCAGAC GAATTTCGCA CAGCGCATGT TCCTGGTCGC GAGCCTACGC AACGACATCA ACGATCAATT CGGCAGCCAT GGCACCTACC GGATCGCACC GGCCGTGATC CTGCCGGTCA CCGAAACCAA GCTGAAGGCG AGCTACGGCA CCGGCTTCAA GGCGCCGACC TTGAGCCAGC TCTATCAGGA CTTTCCGGCG TTCAACTTCT TCGCCAATCC GAACCTCAAG CCGGAGCAGA GCACCGGCTA TGATGCGGGA TTCGAGCAGC CGCTGTTCGA CGATCGCATC CGCTTCGGCG CGACTTACTT CCACAACAGC ATCAGCAACC TGATCAACTC CAATGCGACC TTCACCTCCT ACGCCAATGT CGGACTCGCC ACCACCGAGG GCACCGAGAG CTTCGTCACA GCGCAACTGA CGGACCGGCT GTCGCTGCGC GCGGACTATA CGTTCACGCG CGCGGTCGAC GCGACGACCG GTCAGCAGCT GCTGCGCCGC CCGAAGGAAA AATGGAGCGC GACAGCGATC TGGACGCCGC TGGACCCGCT GACGGTGTCG GCCACCTTGC TGCGCGTCAG CAACTGGCGC GACGTCAGCC GCGACGGCAT GACCTCTGGC CTCGTCGCGC CCGGCTATAC GGTCGTGAAC CTGCGCGCCG ACTACGCGGT CTCCGACAAA GTCAAACTAT TCGGCCGCAT CGATAACCTG TTCAACCGGC ACTATCAGAA CCCGACCGGC TTCCTGGCCC CGGGCCTCGG CATGTTCGGC GGCATCCGTG TGGCGAGCTT CGGGATGGAG TGA
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Protein sequence | MFSFLSVARR HRAGLLSSTV LVSIATFGAA PATAQQSASP DLLPPVEVDP PRKPAAPKSA LPRGAQTPRA RASQPAATQS AAAKANAQLV VSPTGIATPA AHVANAITVV TAKDIATQQA RSVPDILAAI PGLNVVQTGG AGGQSSVFTR GTNANHTKIL IDGIDVGDAT NANGAFDFAH LLTSDIQQFE VLRGPQSGLY GSDAIGGVIS VITRKGDGPA RATASIETGT YQTFNQSAGV SGSQDNVNYA INVAHLHAGD IPVTPQQLLP AGQKAIGNAY DNVTASTKFG VDLNEAWSLN SVLRYTDATL LFTGDGGFPS VPNAAQSSHA VQQFATREEA VWSLLDGRIK NYFVINYVNN RTSDLTAGNP LAAISTGERI KYDWHAVTEL APHNNFIVGL EQQTDRLQTT GLTAENGNRA GFVEVQTNFA QRMFLVASLR NDINDQFGSH GTYRIAPAVI LPVTETKLKA SYGTGFKAPT LSQLYQDFPA FNFFANPNLK PEQSTGYDAG FEQPLFDDRI RFGATYFHNS ISNLINSNAT FTSYANVGLA TTEGTESFVT AQLTDRLSLR ADYTFTRAVD ATTGQQLLRR PKEKWSATAI WTPLDPLTVS ATLLRVSNWR DVSRDGMTSG LVAPGYTVVN LRADYAVSDK VKLFGRIDNL FNRHYQNPTG FLAPGLGMFG GIRVASFGME
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