Gene BBta_6080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_6080 
Symbol 
ID5154758 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp6305969 
End bp6308041 
Gene Length2073 bp 
Protein Length690 aa 
Translation table11 
GC content65% 
IMG OID640560794 
Productputative TonB-dependent receptor 
Protein accessionYP_001241913 
Protein GI148257328 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4206] Outer membrane cobalamin receptor protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.341343 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTCTCGT TCCTATCCGT CGCCCGGCGC CATCGCGCCG GCCTGTTGTC GTCGACCGTC 
CTGGTCTCCA TCGCGACGTT CGGCGCGGCT CCGGCCACCG CCCAGCAATC CGCCTCCCCC
GACCTGCTGC CGCCGGTCGA GGTCGATCCG CCCCGCAAGC CGGCCGCTCC GAAGTCGGCC
TTGCCGCGTG GGGCGCAGAC GCCGCGCGCA CGCGCATCGC AGCCGGCGGC CACGCAGAGC
GCCGCCGCCA AGGCCAACGC ACAACTCGTC GTCAGCCCGA CCGGCATCGC AACCCCCGCT
GCCCATGTGG CGAACGCGAT CACCGTCGTT ACGGCCAAGG ACATCGCCAC ACAACAGGCC
CGCAGCGTGC CCGACATCCT CGCCGCCATT CCCGGCTTGA ACGTCGTGCA GACCGGCGGC
GCTGGCGGGC AGAGCTCGGT CTTCACCCGC GGGACAAACG CGAATCACAC CAAGATCCTG
ATCGACGGCA TCGATGTCGG CGACGCCACC AATGCCAATG GTGCGTTCGA CTTCGCCCAT
CTGCTGACCT CGGACATCCA GCAGTTCGAG GTGCTGAGGG GGCCGCAGAG CGGCCTCTAT
GGCTCGGATG CGATCGGTGG CGTCATCTCG GTGATCACGC GCAAGGGCGA CGGCCCGGCG
CGGGCAACCG CTTCGATCGA GACCGGCACG TATCAGACCT TCAACCAGTC GGCCGGCGTC
AGCGGGTCGC AGGACAATGT GAACTACGCG ATCAATGTCG CGCATCTCCA TGCCGGCGAC
ATTCCGGTCA CGCCACAGCA ATTGCTGCCG GCGGGGCAGA AGGCGATCGG CAACGCCTAT
GACAACGTCA CCGCCTCGAC CAAATTCGGC GTCGACCTCA ACGAGGCCTG GTCGCTGAAT
TCGGTGTTGC GCTATACGGA CGCGACGCTG CTGTTCACCG GCGACGGCGG CTTTCCCAGC
GTCCCGAACG CGGCCCAGAG CAGCCATGCC GTGCAGCAGT TCGCCACGCG CGAGGAAGCC
GTGTGGTCGC TGCTCGACGG CCGCATCAAA AACTATTTCG TTATCAACTA CGTCAACAAC
CGGACGTCCG ATCTCACCGC GGGCAATCCC CTCGCCGCAA TCTCGACCGG CGAGCGCATC
AAATATGATT GGCACGCGGT CACCGAACTC GCTCCGCACA ACAATTTCAT CGTCGGGCTC
GAGCAGCAGA CCGACCGTCT CCAGACCACG GGTCTGACGG CCGAGAACGG CAACAGAGCC
GGCTTCGTCG AGGTGCAGAC GAATTTCGCA CAGCGCATGT TCCTGGTCGC GAGCCTACGC
AACGACATCA ACGATCAATT CGGCAGCCAT GGCACCTACC GGATCGCACC GGCCGTGATC
CTGCCGGTCA CCGAAACCAA GCTGAAGGCG AGCTACGGCA CCGGCTTCAA GGCGCCGACC
TTGAGCCAGC TCTATCAGGA CTTTCCGGCG TTCAACTTCT TCGCCAATCC GAACCTCAAG
CCGGAGCAGA GCACCGGCTA TGATGCGGGA TTCGAGCAGC CGCTGTTCGA CGATCGCATC
CGCTTCGGCG CGACTTACTT CCACAACAGC ATCAGCAACC TGATCAACTC CAATGCGACC
TTCACCTCCT ACGCCAATGT CGGACTCGCC ACCACCGAGG GCACCGAGAG CTTCGTCACA
GCGCAACTGA CGGACCGGCT GTCGCTGCGC GCGGACTATA CGTTCACGCG CGCGGTCGAC
GCGACGACCG GTCAGCAGCT GCTGCGCCGC CCGAAGGAAA AATGGAGCGC GACAGCGATC
TGGACGCCGC TGGACCCGCT GACGGTGTCG GCCACCTTGC TGCGCGTCAG CAACTGGCGC
GACGTCAGCC GCGACGGCAT GACCTCTGGC CTCGTCGCGC CCGGCTATAC GGTCGTGAAC
CTGCGCGCCG ACTACGCGGT CTCCGACAAA GTCAAACTAT TCGGCCGCAT CGATAACCTG
TTCAACCGGC ACTATCAGAA CCCGACCGGC TTCCTGGCCC CGGGCCTCGG CATGTTCGGC
GGCATCCGTG TGGCGAGCTT CGGGATGGAG TGA
 
Protein sequence
MFSFLSVARR HRAGLLSSTV LVSIATFGAA PATAQQSASP DLLPPVEVDP PRKPAAPKSA 
LPRGAQTPRA RASQPAATQS AAAKANAQLV VSPTGIATPA AHVANAITVV TAKDIATQQA
RSVPDILAAI PGLNVVQTGG AGGQSSVFTR GTNANHTKIL IDGIDVGDAT NANGAFDFAH
LLTSDIQQFE VLRGPQSGLY GSDAIGGVIS VITRKGDGPA RATASIETGT YQTFNQSAGV
SGSQDNVNYA INVAHLHAGD IPVTPQQLLP AGQKAIGNAY DNVTASTKFG VDLNEAWSLN
SVLRYTDATL LFTGDGGFPS VPNAAQSSHA VQQFATREEA VWSLLDGRIK NYFVINYVNN
RTSDLTAGNP LAAISTGERI KYDWHAVTEL APHNNFIVGL EQQTDRLQTT GLTAENGNRA
GFVEVQTNFA QRMFLVASLR NDINDQFGSH GTYRIAPAVI LPVTETKLKA SYGTGFKAPT
LSQLYQDFPA FNFFANPNLK PEQSTGYDAG FEQPLFDDRI RFGATYFHNS ISNLINSNAT
FTSYANVGLA TTEGTESFVT AQLTDRLSLR ADYTFTRAVD ATTGQQLLRR PKEKWSATAI
WTPLDPLTVS ATLLRVSNWR DVSRDGMTSG LVAPGYTVVN LRADYAVSDK VKLFGRIDNL
FNRHYQNPTG FLAPGLGMFG GIRVASFGME