| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6079 |
|---|
| Symbol | |
|---|
| ID | 5154800 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 6303467 |
|---|
| End bp | 6305509 |
|---|
| Gene Length | 2043 bp |
|---|
| Protein Length | 680 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640560792 |
|---|
| Product | putative TonB-dependent receptor |
|---|
| Protein accession | YP_001241912 |
|---|
| Protein GI | 148257327 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0972806 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCTCCCG TTTCCCATGC CCGGCACTGC CGCGCCGTCC TGTCCTCGTC CTGTGTGCTC
ACATCGATTG CGCTGCTCGG TGCGTTTTCT GCAGCCGCGC AGCAATCCGC CTCCCCGCAT
CTGCTGCCGC CCGTCGAGGT CGACCCGCCA CACAAACCGG CCGCCCGGAA ACCGGTCGTC
GCCGGCAGAT CTCATGCCCG CAGCGCGGCA TCGGCGCAGA GGCCGGTAGC GCCTGCCGCC
GCCAGCCCAA CCGGCATCGC CACGCCAGCC GCCGAGGCCG GCCGGTCGAT CACCGTGGTG
ACTGACAAGG ATATCGCCAC CCAGCAGGGC CGCAGCCTGC CGGACATCCT GAGCACGGTC
CCCGGCTTGA CCGTCGTGCA GGCCGGCGGT CCGGGCGGGC AGAGCACCGT CTCCACCCGC
GGCACCAGCG CCAACCATAC CAAGCTCGTC ATCGACGGCG TCGATGTCGG CAACGTCACC
AACAGCAATG GCGCGCCCGA TGTCGAGCAT CTGCTCACCG CCGACATCCA GCGGCTCGAG
GTGCTGCGCG GGCCGCAGAG CGGCCTCTAT GGCGCGGATG CGCTCGGCGG CGTGATCTCG
ATCACCACCC GCAAGGGTGA CGGACCGGCA CAAGCCACCG GCTCGATCGA AACCGGCGCG
TATCGGAGTT TCAACCAGAC CGCGGGACTC AGCGGCTCAA AGGATCAATT CAACTACGCG
TTCAACATTG CGCACCTTCA CGCCGGCGAT GTGCCGGTGA CGCCCTGGCA ATTGCTGCCA
CCAGGACGGA AGGCGATCGG CAACGCCTAT GACAACGTCA CGGCGTCGAC CAGGCTCGGC
GTCGACCTGA ACGAGGCTTG GACGCTGAAC GCGCTGGTTC GCCACACCGA CGCGAGCCTG
CTGTTCACCG GGGACAGCGG ATCTCCGAGC TTTCCGAATG CAACCCAAAG CCATCACACC
GACCGCCAGT TGACGACCCG CGAGGAAGCC GTCTGGTCGC TGCTCGGCGG CCGCATCCGC
AACCATTTCG GCGTGAACTA CGTCAACAAC TGGTCTTACG ATCTGGCGCC CGGCAATCCG
GCGCCTACCA TCGCCACCGG CGAGCGCATC AAATATGACT GGCGCGCAGT GGCCGAAATC
GCGCCGCGCA ATCATCTTGT GGTCGGCCTG GAGCAGCAGG CCGAGCGGCT GAAGGCGGCC
GACGTCCTGG CCGAGAACGG CAACAAGGCC GGCTTCGTCG AGCTGCAGAC CGAATTCGCC
AAGCGCTGGT TCGTGGTCGC GAGCCTGCGC GACGATGTCG ACGATCGGTT CGGCGGCCAC
GGCACCTACC GGATCGCGCC GGCGGTGATC CTGCCGGTGA CCGAGACCCG GCTGAAGGCG
AGCTATGGCA CCGGCTTCAA GGTGCCGACC TTGAGCCAGT TGTATCAGAA TTTTCCGGCC
TTCAATTTCT TCGCCAATCC GAACCTGAAG CCGGAGGCGA GCATCGGCTA CGATGCCGGC
TTCGAGCAGC CGCTGTTCGA CGATCGGTTG CGCTTCGGCG CGACCTACTT CCACAATGAC
ATCACCAACC TGATCAGTTT CAACGCGAAC GCCACCTCCT TTGCCAATAT CGGCTTCGCC
ACCACCGAAG GCACCGAGAG CTTCGTCGCG GCGAAACTGA CCGATCGCAT CTGGCTCCGC
GCAGACTACA CGTTCACCCG CGCGGTCGAC GCGAGCACCG GTCAGCAGCT GTTGCGCCAG
CCGAGAGAGA AATGGAGCGC CACCGCCACA TGGCTGCCGG TCGATGCGCT GACGCTGTCG
GCCACCCTGC TGCGCGTCGG CGACTGGCTC GACATCAGCC GCGACGGCAC CACGACCGGC
CTCGTCGCGC CCGGCTATAC GCTGGTGAAT CTGCGCGGCG ACTACGCCCT CTCGGACCAG
GTCAAGCTGT TCGCCCGGAT CGACAATCTG TTCAACCGCC ATTACCAGAA CCCGACCGGC
TTCCTGGCGC CCGGCTTCGG CATGTTCGGC GGCATCCGGA TGGCCACCTC CGGGCTGCAG
TGA
|
|---|
| Protein sequence | MSPVSHARHC RAVLSSSCVL TSIALLGAFS AAAQQSASPH LLPPVEVDPP HKPAARKPVV
AGRSHARSAA SAQRPVAPAA ASPTGIATPA AEAGRSITVV TDKDIATQQG RSLPDILSTV
PGLTVVQAGG PGGQSTVSTR GTSANHTKLV IDGVDVGNVT NSNGAPDVEH LLTADIQRLE
VLRGPQSGLY GADALGGVIS ITTRKGDGPA QATGSIETGA YRSFNQTAGL SGSKDQFNYA
FNIAHLHAGD VPVTPWQLLP PGRKAIGNAY DNVTASTRLG VDLNEAWTLN ALVRHTDASL
LFTGDSGSPS FPNATQSHHT DRQLTTREEA VWSLLGGRIR NHFGVNYVNN WSYDLAPGNP
APTIATGERI KYDWRAVAEI APRNHLVVGL EQQAERLKAA DVLAENGNKA GFVELQTEFA
KRWFVVASLR DDVDDRFGGH GTYRIAPAVI LPVTETRLKA SYGTGFKVPT LSQLYQNFPA
FNFFANPNLK PEASIGYDAG FEQPLFDDRL RFGATYFHND ITNLISFNAN ATSFANIGFA
TTEGTESFVA AKLTDRIWLR ADYTFTRAVD ASTGQQLLRQ PREKWSATAT WLPVDALTLS
ATLLRVGDWL DISRDGTTTG LVAPGYTLVN LRGDYALSDQ VKLFARIDNL FNRHYQNPTG
FLAPGFGMFG GIRMATSGLQ
|
|---|
| |