Gene BBta_5999 details

Gene Information

• Locus tag: BBta_5999
• Symbol: leuD
• ID: 5154238
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bradyrhizobium sp. BTAi1
• Kingdom: Bacteria
• Replicon accession: NC_009485
• Strand: +
• Start bp: 6214091
• End bp: 6214711
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 640560722
• Product: 3-isopropylmalate dehydratase small subunit
• Protein accession: YP_001241844
• Protein GI: 148257259
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0066] 3-isopropylmalate dehydratase small subunit
• TIGRFAM ID: [TIGR00171] 3-isopropylmalate dehydratase, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 0.00648667
• Fosmid Hitchhiker: No
• Fosmid clonability: decreased coverage

Sequence

Gene sequence

ATGAGACCGT TCGACATCAT CACGACGACC GCCTGCGCGC TGCCGCTTGC CAGCATCGAC 
ACCGATCAGT TGATCCCGGC GCGTTTCATG AAACGCTCGC GCGCCGACGG TTACGGTCAA 
TACTTGCTGC ACGACATGCG CTTCGACGAG ACGGGTCAGG CCAGGCCCGA TTTCCCGCTC 
AACGCCGCCA GCGCTGCCGG GGCCGAGGTG CTGGTGACAC GGCGCAATTT CGGCGCCGGC 
TCGTCGCGCG AAGCGGCGGT CTATGCGCTG GTCGATTTCG GCTTCCGCTG CGTGATCGCG 
CCGAGCTTCG GCGACATCTT CGCGTCGAAC GCGGTCAACA ACGGCCTGTT GCCGGCGACG 
GTCAGCGAGG CCGACGCGGA AGAGATCCTG TCCCTGCTGC CATCGACGGG AGCGGCGATC 
ACGATCGATC TGAGAGATGG TCTCATCCGA CTGGGCAATC GCACGTTCTC ATTCAGCGTC 
GATCCGATCT GGCGTACCAA GCTGCTGAAC GGCTGGGACG ACCTTGATCT CACGGTCTCC 
CTGGCTGACG GTATCACCGG CTTCGAAGCG CGCGACGCCC ATCAACGGCC CTGGGCCGCT 
CTCGGAACCC GGCGCGCCTG A 

 

Protein sequence

MRPFDIITTT ACALPLASID TDQLIPARFM KRSRADGYGQ YLLHDMRFDE TGQARPDFPL 
NAASAAGAEV LVTRRNFGAG SSREAAVYAL VDFGFRCVIA PSFGDIFASN AVNNGLLPAT 
VSEADAEEIL SLLPSTGAAI TIDLRDGLIR LGNRTFSFSV DPIWRTKLLN GWDDLDLTVS 
LADGITGFEA RDAHQRPWAA LGTRRA