| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5933 |
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| Symbol | nifA |
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| ID | 5153061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 6149353 |
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| End bp | 6151095 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640560658 |
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| Product | NifA subfamily transcriptional regulator |
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| Protein accession | YP_001241780 |
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| Protein GI | 148257195 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.088253 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCCAAA CGGAAACACG TCAGGTCGAA GCTCAGGACG TCAGGTCCAA CGCAGCCCCG
ATACCGCTCA GCGAGATCGC GCTGACCGGA ATTTTCGAAA TCTCGAAAAT CCTCGCCGCG
CCGACGCGGC TGGAAATCAC GCTCGCCAAC GTCGTCAATC TGCTGCAGTC CTTCATGCAG
ATGCGCCATG GCGTGGTGTC GCTGCTCGCC GACGACGGCA TTCCCGATCT CGCCGTCGGG
GCCGGATGGA GCGAAGGCAG TGACCAGCGC TACCGCGAAC GCCTGCCACA GAAGGCGATC
GATCAGATCG TCGCGACCGC CGTGCCGCTG ATCGCCGAGA ACGTCGCCGA TCACCCGGCC
TTCAGTCCCG CCGACGCGGT GACGCTCGGT GCCGGTGCTG ACACCCGCGT GTCGTTCCTC
GGCGTGCCGA TCCGGATCGA CCAGCGCGTG GTCGGCACGC TCACGATCGA CAGGGTCTGG
GATGGCCGCG CCGTGTTCCG GCTCGACTCC GATGTCCGCT TCCTGACGAT GGTGGCCAAT
CTGATCGGCC AGACCATCAA GCTGCATCGT GTCGTGGCGC GCGATCGCGA GCGGCTGATG
GCGGAGAGCC ACCGGCTGCA GAAGGAGCTG TCGGAGCTGA AGCCGGCGTC GGCCAATCGC
AAGAAGGTGC TGGTCGACGG CATCGTCGGC GACAGCCCGG CGCTGCGGGC GTTGCTCGAC
AAGATCAATG TGGTGGCGAA GTCGAACGCG CCGGTGCTGT TGCGCGGCGA ATCCGGCACC
GGCAAGGAGC TGGTCGCGAA AGCGATCCAC GAATTGTCGA ACCGCGCCAA GCGCCCCTTC
ATCAAGATCA ACTGCGCGGC ACTGCCTGAG ACGGTGCTGG AGTCCGAACT GTTCGGCCAT
GAGAAGGGCG CCTTCACCGG CGCCATCAAT TCGCGCAAAG GCCGCTTCGA GCTCGCTGAC
AAAGGCACCT TGTTCCTCGA CGAGATCGGC GAAATCTCGC CGGCGTTCCA GGCCAAGCTG
CTGCGCGTCC TGCAGGAGCA GGAGTTCGAG CGCGTCGGCG GCAACCAGAC CATCAAGGTC
GATGTCCGCA TCGTCACCGC CACCAACCGC AATCTGGAGG AGGCCGTGTC GCGCAACGAG
TTCCGCGCCG ACCTCTATTA TCGGATCAGC GTGGTTCCGA TCAAGCTGCC TCCGCTGCGC
GAGCGGCGCA GCGACATTCC GCAATTGGCG CATGAGTTCC TGCGCCGCTT CAATTGCGAG
AATGAGCGCG ATCTCACTTT CGACGTCAGC GCCATCGAGG TGCTGATGCA TTGCGGCTTC
CCCGGCAATG TGCGCGAACT GGAGAACTGC GTGCAGCGGA CGGCGACGCT CGCGGCCGGA
TCGGCGATCG GTCAGCACGA CTTCGCCTGC AGCCGCAACG AATGCATGTC GGCGATCCTG
TGGAAGGGCA ACACGGTGAC CCCGCCGCCG CCGCGCGGCC AGCCGATCGT GCCCTTGCCG
ATCCTGCCGC GCTCATCGGC GCCGATCGAA GCGCCGGCCG AGTCGCCGGC TGCTGTTGAT
ATAGACGAGG GGGAGTATTC CGAGAGCATG GACGGCGGCG CCGTGCCCGA GCGCGAGCGC
ATCGTGCAGG CAATGGAGCG CTCCGGCTGG GTCCAGGCCA AGGCCGCGCG CCTGCTCGGC
CTGACCCCGC GCCAGATCGG CTACGCGCTG AAGAAGTACA ATATCGAGGT CAAGCGGTTC
TGA
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| Protein sequence | MVQTETRQVE AQDVRSNAAP IPLSEIALTG IFEISKILAA PTRLEITLAN VVNLLQSFMQ
MRHGVVSLLA DDGIPDLAVG AGWSEGSDQR YRERLPQKAI DQIVATAVPL IAENVADHPA
FSPADAVTLG AGADTRVSFL GVPIRIDQRV VGTLTIDRVW DGRAVFRLDS DVRFLTMVAN
LIGQTIKLHR VVARDRERLM AESHRLQKEL SELKPASANR KKVLVDGIVG DSPALRALLD
KINVVAKSNA PVLLRGESGT GKELVAKAIH ELSNRAKRPF IKINCAALPE TVLESELFGH
EKGAFTGAIN SRKGRFELAD KGTLFLDEIG EISPAFQAKL LRVLQEQEFE RVGGNQTIKV
DVRIVTATNR NLEEAVSRNE FRADLYYRIS VVPIKLPPLR ERRSDIPQLA HEFLRRFNCE
NERDLTFDVS AIEVLMHCGF PGNVRELENC VQRTATLAAG SAIGQHDFAC SRNECMSAIL
WKGNTVTPPP PRGQPIVPLP ILPRSSAPIE APAESPAAVD IDEGEYSESM DGGAVPERER
IVQAMERSGW VQAKAARLLG LTPRQIGYAL KKYNIEVKRF
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