Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_5683 |
Symbol | |
ID | 5150306 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 5930539 |
End bp | 5932008 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640560420 |
Product | putative pilus assembly protein cpaC |
Protein accession | YP_001241542 |
Protein GI | 148256957 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.182381 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGGGTG GGTATCAGCA TCGTGTGAGG ACGGCGACCT GGCTCGTCCG CGCATTCTCG ACCGCGGCGG CGATCGGCCT CGCGATCAAT CCGGCGCTGG CGCCGGTCCA CGCGGCCGAG GACCGGGACA CGCCGGTCGT CTCGGTCGGC TCGTCCAAGG TGCATTATCT GTCGCTCGGA ATCGGCAAGT CCGTCGTCGT CGACTTTCCG CAGGACGTGA AGGACGTACT CGTCGCCGAC CCCAAGATCG CCAACGCCGT GGTGCGCTCG GCGCGGCGCG CCTACATCAT CGGCGCCGCG GTCGGTCAGA CCAATGTCGT GTTCTTCGAC GGCGAGGGAC AGCAGGTCGC GGCCTATGAC ATCGCGATCA AGCGCGATCT CAACGGCGTG CGCCAGGCGC TGAGCCAGAG CATTCCCGGC GTCAAGATCG ATGGCGTCGG CGACGGTGTC ATCCTGACCG GCTCGGTGTC GAGCCCCGTC GAGGCGCAGC AGGCCGGTGA GATCGCAAGC AGGCTGGTCG GCGGCTCCGA CAAGGTCGTC AACTCCATCG TCGTGCGCGG CCGCGACCAG GTGATGCTGA AGGTCAACGT ATCCGAAGTG CGGCGCGAGA TCGTCAAGCA GCTCGGCATC GATCTCAGCG CCAGCATGAC CTACGGCACC GCGGTGGTGA ACTTCAACAA CACCAATCCG TTCACGGCCT ATGGCAAGTC GCTGGTCAAT GGCAACGCCC TCAACGTTTC CGGCGGCGGA TTGTCGTCGG TCTCGGCGAC GATGCGCGCG ATGGAGACGG CGGGCGTCAC CAAGACGCTG GCCGAACCGA ATCTGACCGC GATATCCGGC GAATCCGCCA CCTTCATCGC CGGCGGCGAA TTCCCGGTTC CCGGCGGCTA TAATTGCGAT CCGACCACGC GGGTCTGCAC CACCTCGATC ACCTACAAGA AGTTCGGCAT CTCGCTCAAC TTCACGCCGG TCGTGCTCAG CGAAGGCCGC ATCAGCCTGC GCGTCATGAC CGAAGTCTCG GAACTGTCGA ACGACAACGC GATCACCGTG TCGTATGCGC TGACCTCGAC GTCGAGCTCG TCGGTCACGA TCCCCGCGAT CCGCACCCGT CGCGCCGAAA CCACGCTGGA GATTCCGTCC GGCGGCTCGA TGGCGATGGC CGGCCTGATC CAGAACCAGA CCAAGCAGGC GATCAACGGC CTGCCCGGCG TCGACCAGCT GCCGGTGCTC GGCCAGCTGT TCCGCAGCAA GGACTACGTC AACAACGAGA CCGAGCTGAT GGTGCTGGTG ACGCCCTATG TCGTGCGCGC CGTGGCGCAG AAGGAGCTGG CGCGTCCGGA TGACGGCTTC GCGCCGGCGA CGGATTCGGA ATCGGCGCTG CTCGGCCGCA TGAACCGGCT CTACGGCATC GCCGCAAAAG TCGACACGGC CACGGGCGAG CCGGCCGGCT TCGGCTTCAT CATCGACTGA
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Protein sequence | MRGGYQHRVR TATWLVRAFS TAAAIGLAIN PALAPVHAAE DRDTPVVSVG SSKVHYLSLG IGKSVVVDFP QDVKDVLVAD PKIANAVVRS ARRAYIIGAA VGQTNVVFFD GEGQQVAAYD IAIKRDLNGV RQALSQSIPG VKIDGVGDGV ILTGSVSSPV EAQQAGEIAS RLVGGSDKVV NSIVVRGRDQ VMLKVNVSEV RREIVKQLGI DLSASMTYGT AVVNFNNTNP FTAYGKSLVN GNALNVSGGG LSSVSATMRA METAGVTKTL AEPNLTAISG ESATFIAGGE FPVPGGYNCD PTTRVCTTSI TYKKFGISLN FTPVVLSEGR ISLRVMTEVS ELSNDNAITV SYALTSTSSS SVTIPAIRTR RAETTLEIPS GGSMAMAGLI QNQTKQAING LPGVDQLPVL GQLFRSKDYV NNETELMVLV TPYVVRAVAQ KELARPDDGF APATDSESAL LGRMNRLYGI AAKVDTATGE PAGFGFIID
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