Gene BBta_5683 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_5683 
Symbol 
ID5150306 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp5930539 
End bp5932008 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content66% 
IMG OID640560420 
Productputative pilus assembly protein cpaC 
Protein accessionYP_001241542 
Protein GI148256957 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4964] Flp pilus assembly protein, secretin CpaC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.182381 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGGGTG GGTATCAGCA TCGTGTGAGG ACGGCGACCT GGCTCGTCCG CGCATTCTCG 
ACCGCGGCGG CGATCGGCCT CGCGATCAAT CCGGCGCTGG CGCCGGTCCA CGCGGCCGAG
GACCGGGACA CGCCGGTCGT CTCGGTCGGC TCGTCCAAGG TGCATTATCT GTCGCTCGGA
ATCGGCAAGT CCGTCGTCGT CGACTTTCCG CAGGACGTGA AGGACGTACT CGTCGCCGAC
CCCAAGATCG CCAACGCCGT GGTGCGCTCG GCGCGGCGCG CCTACATCAT CGGCGCCGCG
GTCGGTCAGA CCAATGTCGT GTTCTTCGAC GGCGAGGGAC AGCAGGTCGC GGCCTATGAC
ATCGCGATCA AGCGCGATCT CAACGGCGTG CGCCAGGCGC TGAGCCAGAG CATTCCCGGC
GTCAAGATCG ATGGCGTCGG CGACGGTGTC ATCCTGACCG GCTCGGTGTC GAGCCCCGTC
GAGGCGCAGC AGGCCGGTGA GATCGCAAGC AGGCTGGTCG GCGGCTCCGA CAAGGTCGTC
AACTCCATCG TCGTGCGCGG CCGCGACCAG GTGATGCTGA AGGTCAACGT ATCCGAAGTG
CGGCGCGAGA TCGTCAAGCA GCTCGGCATC GATCTCAGCG CCAGCATGAC CTACGGCACC
GCGGTGGTGA ACTTCAACAA CACCAATCCG TTCACGGCCT ATGGCAAGTC GCTGGTCAAT
GGCAACGCCC TCAACGTTTC CGGCGGCGGA TTGTCGTCGG TCTCGGCGAC GATGCGCGCG
ATGGAGACGG CGGGCGTCAC CAAGACGCTG GCCGAACCGA ATCTGACCGC GATATCCGGC
GAATCCGCCA CCTTCATCGC CGGCGGCGAA TTCCCGGTTC CCGGCGGCTA TAATTGCGAT
CCGACCACGC GGGTCTGCAC CACCTCGATC ACCTACAAGA AGTTCGGCAT CTCGCTCAAC
TTCACGCCGG TCGTGCTCAG CGAAGGCCGC ATCAGCCTGC GCGTCATGAC CGAAGTCTCG
GAACTGTCGA ACGACAACGC GATCACCGTG TCGTATGCGC TGACCTCGAC GTCGAGCTCG
TCGGTCACGA TCCCCGCGAT CCGCACCCGT CGCGCCGAAA CCACGCTGGA GATTCCGTCC
GGCGGCTCGA TGGCGATGGC CGGCCTGATC CAGAACCAGA CCAAGCAGGC GATCAACGGC
CTGCCCGGCG TCGACCAGCT GCCGGTGCTC GGCCAGCTGT TCCGCAGCAA GGACTACGTC
AACAACGAGA CCGAGCTGAT GGTGCTGGTG ACGCCCTATG TCGTGCGCGC CGTGGCGCAG
AAGGAGCTGG CGCGTCCGGA TGACGGCTTC GCGCCGGCGA CGGATTCGGA ATCGGCGCTG
CTCGGCCGCA TGAACCGGCT CTACGGCATC GCCGCAAAAG TCGACACGGC CACGGGCGAG
CCGGCCGGCT TCGGCTTCAT CATCGACTGA
 
Protein sequence
MRGGYQHRVR TATWLVRAFS TAAAIGLAIN PALAPVHAAE DRDTPVVSVG SSKVHYLSLG 
IGKSVVVDFP QDVKDVLVAD PKIANAVVRS ARRAYIIGAA VGQTNVVFFD GEGQQVAAYD
IAIKRDLNGV RQALSQSIPG VKIDGVGDGV ILTGSVSSPV EAQQAGEIAS RLVGGSDKVV
NSIVVRGRDQ VMLKVNVSEV RREIVKQLGI DLSASMTYGT AVVNFNNTNP FTAYGKSLVN
GNALNVSGGG LSSVSATMRA METAGVTKTL AEPNLTAISG ESATFIAGGE FPVPGGYNCD
PTTRVCTTSI TYKKFGISLN FTPVVLSEGR ISLRVMTEVS ELSNDNAITV SYALTSTSSS
SVTIPAIRTR RAETTLEIPS GGSMAMAGLI QNQTKQAING LPGVDQLPVL GQLFRSKDYV
NNETELMVLV TPYVVRAVAQ KELARPDDGF APATDSESAL LGRMNRLYGI AAKVDTATGE
PAGFGFIID