| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5670 |
|---|
| Symbol | rfaF |
|---|
| ID | 5150425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 5916628 |
|---|
| End bp | 5917692 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640560408 |
|---|
| Product | ADP-heptose--LPS heptosyltransferase II |
|---|
| Protein accession | YP_001241530 |
|---|
| Protein GI | 148256945 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
|---|
| TIGRFAM ID | [TIGR02195] lipopolysaccharide heptosyltransferase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.170483 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCCA ATTCGCCCAA AATCGAGGTG GACGAGACGG ACACCAGCCC GATCCTGATC
ATTCCCTATA TGTGGATCGG GGATTTCGTG CGCGGCCACA CCGTGGTGCG GGTGCTCAAG
GAGCGCTGGC CGAACCGTCC TGTGGACCTG CTGGTGACCT CGCTCTGCGC CCCGCTGGTC
GATTACATGC CCGGCGTCCG CTCCGGCATT GTCTGGGACC TGCCGCGCAG CCGGCTGGCG
CTCGCTAAAC AGTGGCAGCT CGCCAGCCTG TTGCGCCAAC GCCACTATCG GACCGCCCTG
GTGATGCCGC GGACCTGGAA GGCGGCACTT GCGCCGGCGC TTGCCGGCAT CCCTGAGCGG
GTGGGCTTCG TCGGCGAGGC CCGGTTCGGG CTGCTCAACC AGTGGCGCTG GGGCGAGAAG
GCCCTGCCCC GCTTCATCGA CAAGAACGCC GCGCTGGCCC TGCCTGACGG TGCGGGGCTG
CCGCCCGAAT GGCCGGTCCC GCAGCTGCGG GTACCTCCGG AGCAGGTCGC ACGCTGGCGC
GAAGCCCAGG GGCTGGGCAG CCGGCCGGCG GTGGCGCTGG CGCCCGGTTC GGTCGGCGCG
GCCAAGCGCT GGCCGTTCTA CGGCGAGGCT GCGCGGCTGC TGCGCGACGC CGGCTTGGAC
GTCTGGGTGG TCGGCGGCCC CGGCGAGAAG CCGCTCGCCG CCGAGATCGT CGCCTCCGGC
GGACCTGCCG TCCGTGATCT GACCGGGACC GACCTGCGCA ACGGCATTCT CGCCATGGCC
GCGGCCGGTG TAGCGATTTC CAACGATTCG GGCCTGATGC ACATCGCCGC CGCGCTGGGC
ACGCCAACCA TGGGCATCTT CGGTCCCACC AGCCCGTACC ATTGGGCGCC GCTGAACGGC
CTAGCGGCGA CCGTCCAGAC CAAGACGCAG GTCCCCTGCC AGCCGTGCCA CCGTCCGGTC
TGCCGGATGA ACGACCACCG CTGCATGCGC GACATCCCCG CCGGCGATGT CGCGGCCATT
GCCCGGCAGG TGCTGGCGGA TGCGGCGGCG AGCGTCGCGC ATTAG
|
|---|
| Protein sequence | MNSNSPKIEV DETDTSPILI IPYMWIGDFV RGHTVVRVLK ERWPNRPVDL LVTSLCAPLV
DYMPGVRSGI VWDLPRSRLA LAKQWQLASL LRQRHYRTAL VMPRTWKAAL APALAGIPER
VGFVGEARFG LLNQWRWGEK ALPRFIDKNA ALALPDGAGL PPEWPVPQLR VPPEQVARWR
EAQGLGSRPA VALAPGSVGA AKRWPFYGEA ARLLRDAGLD VWVVGGPGEK PLAAEIVASG
GPAVRDLTGT DLRNGILAMA AAGVAISNDS GLMHIAAALG TPTMGIFGPT SPYHWAPLNG
LAATVQTKTQ VPCQPCHRPV CRMNDHRCMR DIPAGDVAAI ARQVLADAAA SVAH
|
|---|
| |