Gene BBta_5154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_5154 
Symbol 
ID5153653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp5387375 
End bp5388574 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content62% 
IMG OID640559929 
Productputative branched-chain amino acid ABC transport system substrate-binding protein 
Protein accessionYP_001241056 
Protein GI148256471 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.210774 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0422274 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGACAC AGTGGATTCT CGCCGCGGCG CTGTCGCTCG TCGCCGGGCA GGTGGCCGTC 
GCCGCAGACA CGCCCGGCGT CACGGCGACA GAAATCAAGA TCGGCGGCGT ATTCCCCTTC
AGCGGGCCGG CGTCGTCGCT TGGTCTCGTT GGTCGCGGGC TGATCGCCTA TATCCAGTCG
CTCAACGATC GCGGCGGCAT TAATGGGCGC AAGATCAACT ACATCACGTA TGATGACGGC
TACAGCCCGC CCAAGACGGT CGAGCACGTC CGCAAGCTGG TCGAGAGCGA CGAGGTCGCC
TTCATGTATG GCCAGCTCGG GACGGCAGGA ATCTCGGCCA CGGCGAAGTA TCTGCGGACG
AAGGGGGTGC CCAGCATCGC CATCATCAGC GGCTCGGCCA AGTTCACGAA TGTCTCGGAC
TATCCGCTGA TCACCACCGG GCTCGTCAGC TACGACACGG AAGGAAAGAT CTACGCGAAG
TACCTGACGA AGGCGCTGCC GAACGCCAAG TACGCCATTC TTTATCAGAA CGATGATCTT
GGGAAAGACT ACGTCAACGC CTTCAAGTCC TATCTCGGCA AGAACTTCGA CAGCAAGGTC
GTCAGCGCCT CCTACGAGGT CAGCGAGCCG ACCATCGATT CGCAAGTCAC CAACCTGAAG
AGCTCGGGCG CTGAGGCGCT GGTGATCGCC GGCACGCCGA AATTCGCCGC GCAGGCGATC
CGGCAGGCCT ATTTGATCGG CTGGAAGGCC ACGGTGATCG TCAACTTTCC CTCCGGATCG
GTCGGCGGGA CGCTGGCGCC TGCTGGGCTC GACAAGTCGG TCGGCGTGAT CGTCGGCAGC
ACCAACAAGG ACGCTCTCGA CGAGTCCTGG AAGAGCGATC CGGGCGTGCA GGCCTACCGG
GCCTTTTTCG ACAAATATCT GCAGGGCGCG GACCTGTCCA ACGGCAGTTA TCTGACCGGC
TATCAGCAGG GCCTGGTGCT GGAACAGATT CTCAAGCAAT GCGGCGACGA CCTGTCGCGC
AAGAACATCC TCGCCCAGGC CAAGAGCCTG CGCGACTTCG TCGTGCCGAC GGCGCTTCCG
GGAGTCAAGG TCAACACGAG CGAGACGGAG AACATGATCT GGACCCAGAT GCGTCTGCAA
CGCTGGACCG GTTCGGCCTG GGAAGCCTTC GGCGACGTTC TGGACGCCAA GTCTGACTGA
 
Protein sequence
MKTQWILAAA LSLVAGQVAV AADTPGVTAT EIKIGGVFPF SGPASSLGLV GRGLIAYIQS 
LNDRGGINGR KINYITYDDG YSPPKTVEHV RKLVESDEVA FMYGQLGTAG ISATAKYLRT
KGVPSIAIIS GSAKFTNVSD YPLITTGLVS YDTEGKIYAK YLTKALPNAK YAILYQNDDL
GKDYVNAFKS YLGKNFDSKV VSASYEVSEP TIDSQVTNLK SSGAEALVIA GTPKFAAQAI
RQAYLIGWKA TVIVNFPSGS VGGTLAPAGL DKSVGVIVGS TNKDALDESW KSDPGVQAYR
AFFDKYLQGA DLSNGSYLTG YQQGLVLEQI LKQCGDDLSR KNILAQAKSL RDFVVPTALP
GVKVNTSETE NMIWTQMRLQ RWTGSAWEAF GDVLDAKSD