| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5081 |
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| Symbol | rpoB |
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| ID | 5152013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 5304640 |
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| End bp | 5308758 |
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| Gene Length | 4119 bp |
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| Protein Length | 1372 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640559858 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001240987 |
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| Protein GI | 148256402 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.563894 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.835448 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAGC AGACATTCAC CGGTCGCAAA CGCGTTCGCA AGTTCTTTGG ACACATCAAG
GAAGTCGCGG AAATGCCGAA CCTCATCGAG GTTCAGAAGG CGTCCTACGA CCAGTTCCTG
ATGGTCGACG AACCCACGGG TGGGCGGCCG GATGAGGGAT TGCAGGCGGT GTTCCGCTCG
GTGTTCCCGA TCTCCGATTT CTCGGGCACC TCGATGCTGG AATTCGTCCG CTACGAGTTC
GAGCCGCCGA AATATGACGT GGACGAGTGC CGCCAGCGCG GCATGACCTT TGCCGCGCCG
CTCAAGGTGA CGCTGCGCCT CATCGTGTTC GATATCGACG AGGAGACCGG CGCCAAGTCG
GTCAAGGACA TCAAGGAGCA GGACGTGTAC ATGGGCGATA TTCCGCTCAT GACCATGAAC
GGCACCTTCA TCGTCAACGG CACCGAGCGC GTCATCGTCT CGCAGATGCA TCGCTCGCCG
GGCGTGTTCT TCGACCACGA CAAGGGCAAG ACCCATTCGT CGGGCAAGCT GCTGTTCGCC
GCCCGCGTCA TCCCCTATCG CGGCTCCTGG CTCGACATCG AGTTCGATGC CAAGGACATC
GTGTTCGCGC GCATCGACCG TCGCCGCAAG ATCCCGGTGA CGTCGCTGAT GTTCGCGCTC
GGCCTGGATG GCGAGCAGAT CCTGTCGACC TTCTACAAGA AGCTGATCTA CAAGCGCATC
AAGGAAGGCT GGCGCGTTCC GTTCGACGCC AACCGTTTCC GCGGCTATTC GACGGTCAAC
GATCTCATCG ATGCCGACAC CGGCAAGGTC GTGCTCGAGG CCGGCAAGAA GCTCACCGTC
CGCACCGCGC GCCAGCTCCA GGAGAAGGGG CTGAAGGCGC TGCGCATGTC GGACGAGGAA
CTGCTCGGCA ATTACATCGC CGAGGATCTC GTCAACCCGA AGACCGGCGA GATCTACGCC
GAGGCCGGCG AGGAGATCAC CGACAAGCTG TTCAAGGTGC TGAACGAGCA GGGCTACAAG
GATCTGCCGC TGCTCGACAT CGACCACGTC AATGTCGGCC CCTACATCCG CAACACGCTG
TCGGCCGACA AGAACATGAC GCGTGAAGAC GCGCTGTTCG ACATCTACCG CGTGATGCGT
CCGGGCGAGC CGCCGACGCT GGATTCCGCC CAGGCGATGT TCCAGTCGCT GTTCTTCGAT
GCCGAGCGCT ACGACCTCTC CGCGGTCGGC CGCGTCAAGA TGAACATGCG TCTCGAGCTC
GATGCGCCGG ACACCCAGCG CACCCTGCGC AAGGAGGACA TCCTCGCGGT CATCAAGACC
CTGGTCGACC TGCGCGACGG CAAGGGCGAG ATCGACGACA TCGACCATCT CGGCAACCGC
CGCGTCCGCT CGGTCGGCGA GCTGATGGAG AACCAGTACC GCATCGGTCT GCTCCGCATG
GAGCGCGCCA TCAAGGAGCG CATGTCGAGC GTCGACATCG ACACCGTGAT GCCGCAGGAC
CTGATCAACG CCAAGCCGGC CGCGGCCGCG GTGCGCGAGT TCTTCGGCTC GTCGCAGCTG
TCGCAGTTCA TGGACCAGAC CAACCCGCTG TCGGAGATCA CCCACAAGCG CCGCCTGTCG
GCGCTCGGAC CGGGCGGTCT GACCCGCGAG CGCGCCGGCT TCGAGGTGCG TGACGTGCAT
CCGACGCATT ACGGCCGCAT CTGCCCGATC GAGACGCCGG AAGGTCCGAA CATCGGCCTG
ATCAACTCGC TCGCGACGTT TGCGCGCGTC AACAAGTATG GCTTCGTCGA GACGCCGTAC
CGCAAGGTCA GGGACGGCCG GGTCACCGAC GAGGTGGTCT ATCTGTCGGC CATGGAGGAG
GGGCGTTATC GCGTCGCGCA GGCCAACGTG CCGCTCGATG CCAAGGGCCG CTTCACCGAG
GACCTCGTGG TCTGCCGTCA TGCCGGCGAA GTCGTGCCGA TGACGCCGGA CAAGGTCGAC
TACATGGACG TGTCGCCGAA GCAGCTGGTT TCGGTCGCCG CGGCGCTGAT CCCGTTCCTG
GAGAACGACG ACGCCAACCG CGCGCTGATG GGCTCGAACA TGCAGCGCCA GGCGGTGCCG
CTGGTGCGCG CCGAGGCGCC GTTCGTCGGT ACCGGCATGG AGGGCGTCGT CGCGCGTGAC
TCGGGTGCTG CGATCGCGGC GCGCCGCTCG GGCGTGGTCG ACCAGATCGA CGCCACACGC
GTCGTCATCC GCGCCACCGA GGATCTCGAT CCGACCAAGT CGGGCGTCGA CATCTACCGG
CTGATGAAGT TCCAGCGCTC CAACCAGTCG ACCTGCATCA ACCAGCGTCC GCTGGTGAAG
GTCGGCGACA TCGTCAAGAA GGGTGACATC ATCGCCGACG GTCCGTCGAC CGATCTCGGC
GAGCTCGCGC TCGGCCGCAA CGTGCTGGTC GCGTTCATGC CGTGGAACGG CTACAACTTC
GAAGACTCGA TCCTGCTCTC CGAGCGGATC GTGAAGGAGG ACGTCTTCAC CTCGATCCAT
ATCGAGGAGT TCGAGGTGAT GGCCCGCGAC ACCAAGCTGG GGCCGGAGGA AATCACGCGC
GACATTCCGA ACGTGTCGGA AGAGGCGCTG AAGAACCTCG ACGAAGCCGG CATCGTCTAT
ATCGGCGCGG AAGTGCGCGC CGGCGACATC CTGGTCGGCA AGATCACGCC GAAGGGCGAG
AGCCCGATGA CGCCGGAAGA GAAGCTGCTC CGCGCCATCT TCGGCGAGAA AGCCTCGGAC
GTGCGTGACA CCTCGCTGCG GGTGCCGCCG GGCGTGCAGG GCACGATCGT CGAGGTCCGC
GTGTTCAACC GCCACGGCGT CGACAAGGAC GAGCGTGCGC TGGCGATCGA GCGGGAAGAG
ATCGAGCGTC TGGCCAAGGA CCGCGACGAC GAGCAGGCGA TCCTGGACCG CAACGTCTAC
AGCCGTCTTG CCGACATGCT GGACGGCCGC CAGGGCATCT CCGGTCCGAA GGGGTTCAAG
AAGGACACCA AGATCACCCG CGCGGTGCTC GACGAGTATC CGAAGTCGCA ATGGTGGCTG
TTCGCCTCGG CGAACGACAA GCTGATGGCC GAGATCGAGG CCATGCGGAA GCAGTACGAC
GAGTCGAAGA AGGGGCTTGA ACAGCGCTTC CTCGACAAGG TCGAGAAGCT GCAGCGCGGC
GACGAGCTGC CGCCGGGCGT GATGAAGATG GTCAAGGTCT TCGTCGCCGT GAAGCGCAAG
ATCCAGCCGG GCGACAAGAT GGCCGGCCGT CACGGCAACA AGGGCGTCGT GTCCAAGATC
GTTCCGATCG AGGACATGCC GTTCCTCGAG GACGGCACCC ATGCGGACAT CGTGCTGAAC
CCGCTGGGCG TGCCCTCGCG CATGAATGTC GGTCAGATCC TCGAGACGCA TCTCGGCTGG
GCCTGCGCCG GCCTGGGTAA GCGCATCGCC CAGACGGTCG ATGCCTATCT GTCGAAGCAG
GACGTCAAGC CGCTGAAGGA AACCCTGAAG CGGATCTACG GCGAGGACGA GACCATCAAG
TCGCTCAACG ACAATGAGCT GCTCGAGCTC GGTCACAATC TGAGCCGCGG CGTGCCGATC
GCCACCCCGG TGTTCGACGG TGCCAAGGAG GCCGACATCG AGGAGATGCT GAAGCTCGCC
GGCATGGACG CGTCCGGCCA GTCGACCGTC TATGACGGCC GCACCGGCGA TCCGTTCGAT
CGCAAGGTCA CGGTGGGCTA CATCTATATG CTCAAGCTGC ACCATCTGGT CGACGACAAG
ATCCATGCGC GTTCGATCGG CCCGTACTCG CTGGTCACCC AGCAGCCGCT GGGCGGCAAG
GCCCAGTTCG GCGGCCAGCG CTTCGGCGAA ATGGAGGTGT GGGCGCTCGA AGCCTACGGC
GCGGCCTACA CGCTGCAGGA GATGCTGACG GTGAAGTCGG ACGACGTCGC CGGCCGCACC
AAGGTCTATG AGGCGATCGT GCGCGGCGAC GACACGTTCG AGGCCGGTAT TCCGGAATCG
TTCAACGTGC TGGTCAAGGA AATGCGCTCG CTCGGCCTGA ACGTCGACCT GCACAACTCC
AAGCTCGGAC CGGCGCCGAC GTCGGAAGCC GCCGAGTAG
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| Protein sequence | MAQQTFTGRK RVRKFFGHIK EVAEMPNLIE VQKASYDQFL MVDEPTGGRP DEGLQAVFRS
VFPISDFSGT SMLEFVRYEF EPPKYDVDEC RQRGMTFAAP LKVTLRLIVF DIDEETGAKS
VKDIKEQDVY MGDIPLMTMN GTFIVNGTER VIVSQMHRSP GVFFDHDKGK THSSGKLLFA
ARVIPYRGSW LDIEFDAKDI VFARIDRRRK IPVTSLMFAL GLDGEQILST FYKKLIYKRI
KEGWRVPFDA NRFRGYSTVN DLIDADTGKV VLEAGKKLTV RTARQLQEKG LKALRMSDEE
LLGNYIAEDL VNPKTGEIYA EAGEEITDKL FKVLNEQGYK DLPLLDIDHV NVGPYIRNTL
SADKNMTRED ALFDIYRVMR PGEPPTLDSA QAMFQSLFFD AERYDLSAVG RVKMNMRLEL
DAPDTQRTLR KEDILAVIKT LVDLRDGKGE IDDIDHLGNR RVRSVGELME NQYRIGLLRM
ERAIKERMSS VDIDTVMPQD LINAKPAAAA VREFFGSSQL SQFMDQTNPL SEITHKRRLS
ALGPGGLTRE RAGFEVRDVH PTHYGRICPI ETPEGPNIGL INSLATFARV NKYGFVETPY
RKVRDGRVTD EVVYLSAMEE GRYRVAQANV PLDAKGRFTE DLVVCRHAGE VVPMTPDKVD
YMDVSPKQLV SVAAALIPFL ENDDANRALM GSNMQRQAVP LVRAEAPFVG TGMEGVVARD
SGAAIAARRS GVVDQIDATR VVIRATEDLD PTKSGVDIYR LMKFQRSNQS TCINQRPLVK
VGDIVKKGDI IADGPSTDLG ELALGRNVLV AFMPWNGYNF EDSILLSERI VKEDVFTSIH
IEEFEVMARD TKLGPEEITR DIPNVSEEAL KNLDEAGIVY IGAEVRAGDI LVGKITPKGE
SPMTPEEKLL RAIFGEKASD VRDTSLRVPP GVQGTIVEVR VFNRHGVDKD ERALAIEREE
IERLAKDRDD EQAILDRNVY SRLADMLDGR QGISGPKGFK KDTKITRAVL DEYPKSQWWL
FASANDKLMA EIEAMRKQYD ESKKGLEQRF LDKVEKLQRG DELPPGVMKM VKVFVAVKRK
IQPGDKMAGR HGNKGVVSKI VPIEDMPFLE DGTHADIVLN PLGVPSRMNV GQILETHLGW
ACAGLGKRIA QTVDAYLSKQ DVKPLKETLK RIYGEDETIK SLNDNELLEL GHNLSRGVPI
ATPVFDGAKE ADIEEMLKLA GMDASGQSTV YDGRTGDPFD RKVTVGYIYM LKLHHLVDDK
IHARSIGPYS LVTQQPLGGK AQFGGQRFGE MEVWALEAYG AAYTLQEMLT VKSDDVAGRT
KVYEAIVRGD DTFEAGIPES FNVLVKEMRS LGLNVDLHNS KLGPAPTSEA AE
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