Gene BBta_4877 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_4877 
Symbol 
ID5152778 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp5116869 
End bp5118551 
Gene Length1683 bp 
Protein Length560 aa 
Translation table11 
GC content63% 
IMG OID640559674 
Productputative ABC transporter, substrate binding protein 
Protein accessionYP_001240805 
Protein GI148256220 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.674427 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0830201 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCACCGAA CGATCAGCCC GTTAGTCTTG TGGTCCGCGT TCGATCGCGC CAACTCACTC 
TCTCGAGCAA AACCTCCCAT GACTGTCTCC GACCGTTTCA ACCCGCGCGC CAGCCGGCGC
GAGGTACTGA CCGCATCTCT TACCCTCGCC GCAGCTCAGC TGTTTCCCGG TCGCGCCGTC
GCGGAGGCCA GGCGCGGTGG CATCCTGACC ATCGCCACCC AGGCGGAGCC GCGGACATTG
GTGCCCCTGC TCGACACCAA CACGCTGACC CGCAACATCA GCACCAAGGT CACCGAGGGG
CTGCTGACCT TCGACGCGCA GTTCAATCCG AAGCCGCTGC TGGCGACGGA ATGGACGGTG
TCTCCGGACG GGCTGGACTA TGCCTTCAAG CTGCGGCCGA ACGTCAAATG GCACGATGGC
ACCAGCTTCA CCTCCGAGGA CGTCAAATTC TCACTGCTCG CATTGAAGAA GGTCGGGCCG
CGCGGACGCA TCAGCTTTGC CAACATCGCC GACATCGAGA CGCCGGATCC GCTTACGGTC
CTCGTCAAGC TCGCCAAGCC GACGCCCTAC TTCCTGAAGG CCTTGACCGC GGCTGAATCG
CCGATCGTGC CGAAGCACGC CTATGCTTCG GACGACCTTG CCGCCAGCCC GAACAACAAC
GCGCCGATCG GCACCGGTCC CTTCATCTTC GAAGAATGGA AGCGCGGCGC CTATGTTCGC
CTCAAGCGCA ATCCGTCCTA TTGGCGCGCT GACCGGCCCT ATCTCGACGG CATCGTCGTC
AAGTTCATCG GCGACGCCGC GGCCGCCTCG GCGGCGCTGG AGACCGGCGA GATCGACATC
GACGCCAACG TGGCATTTTC CGACCTGGAG CGCCTGGGCG GCATCAAGAC GCTACAGATC
TCGTCACGGC GCGACGGCTA TCTCAACAAC GCTTCCGTCC TGGAGTTCAA TCTCGAGCAC
ACCGAGCTGG CCAAGACGCC CGTTCGCCAC GCGATCGCCC ATGCCATCGA CCGCAACTTC
ATCCGCGACT CGATCTATTA CGGCCACGCC GACCATATCC GTTCGCCGAT CCCCGAGATC
TTCCAGGCCT ATCACGATCC CGCAGGCTTC AACTATCCGA CCGATATCGC CAGAGCGAAC
CGGCTGCTCG ACGAGGCCGG CGTCACGCGT GGGCGTGACG GCACGCGCTT TTCCGTCCGG
CTCACCTTCA TTCCCGGCCC CGCCTTCAAG ACTACGGCGG ACTATCTGCG CTCGGCGTTG
AGCCAGATCG GCATCAAGGT CACGGTGCTC GAGGGGGATC TCGCGACCTT CATCAAGCGG
GTCTATTACG AGCATCAGTT CGACCTCAAC ATCAACGGCC TCGGCCTCTT GTTTGATCCG
ACCGTCGGCG TGCAGCGGAT CTACTGGTCG GACGGGATCA AGAATCCCCT GCCCTATGTC
AACGCCGCCC ACTACAACAA TCCGGCGGTC GACGATCTCT TCCGCCAGGC GAGCACCGAA
GCCGACGAAA GCAAGCGCGC CCAGCAGTTC CGCGCCTTCC AGACAATCGC GAGCGAGGAC
TTGCCCGCCC TGCCGCTGGT ATCGCTGCGG ACGGTCATCG TCTCCAGCAA TCGGGTGAAG
GACATCTACA ACAGCGTCGA CCTGACCGCC GGAGACTTCT CCGATACCTG GCTCGATCGC
TGA
 
Protein sequence
MHRTISPLVL WSAFDRANSL SRAKPPMTVS DRFNPRASRR EVLTASLTLA AAQLFPGRAV 
AEARRGGILT IATQAEPRTL VPLLDTNTLT RNISTKVTEG LLTFDAQFNP KPLLATEWTV
SPDGLDYAFK LRPNVKWHDG TSFTSEDVKF SLLALKKVGP RGRISFANIA DIETPDPLTV
LVKLAKPTPY FLKALTAAES PIVPKHAYAS DDLAASPNNN APIGTGPFIF EEWKRGAYVR
LKRNPSYWRA DRPYLDGIVV KFIGDAAAAS AALETGEIDI DANVAFSDLE RLGGIKTLQI
SSRRDGYLNN ASVLEFNLEH TELAKTPVRH AIAHAIDRNF IRDSIYYGHA DHIRSPIPEI
FQAYHDPAGF NYPTDIARAN RLLDEAGVTR GRDGTRFSVR LTFIPGPAFK TTADYLRSAL
SQIGIKVTVL EGDLATFIKR VYYEHQFDLN INGLGLLFDP TVGVQRIYWS DGIKNPLPYV
NAAHYNNPAV DDLFRQASTE ADESKRAQQF RAFQTIASED LPALPLVSLR TVIVSSNRVK
DIYNSVDLTA GDFSDTWLDR