| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4733 |
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| Symbol | topA |
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| ID | 5153124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 4959842 |
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| End bp | 4962592 |
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| Gene Length | 2751 bp |
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| Protein Length | 916 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640559534 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001240665 |
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| Protein GI | 148256080 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.767724 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATCG TCATCGTGGA GTCGCCTGCA AAGGCCAAGA CGATCAATAA ATATCTGGGC
TCCTCCTACG AGGTTCTGGC CTCTTTTGGT CATGTCCGCG ACCTTCCGGC CAAGAACGGT
TCGGTCGATC CGGACGAGAA TTTCCGGATG ATCTGGGAGG TCGACCCCAA GGCTGCCGGC
CGACTCAACG ACATCGCCAA ATCGCTCAAG AATGCAGACC GACTGATTCT CGCCACTGAC
CCCGATCGTG AGGGAGAGGC GATCTCCTGG CACGTGCTCG AAGTGTTGAA GGAGAAGCGC
GCGCTCAAGG ATCAGAAGAT CGAGCGCGTG GTCTTCAACG CCATCACCAA GCAGGCCGTG
TCGGAGGCGA TGAAGCATCC GCGCCAGATC GACGGCGCGC TGGTCGACGC CTATATGGCG
CGCCGCGCCC TCGATTACCT CGTCGGCTTC ACGCTCTCCC CCGTGCTGTG GCGCAAGCTG
CCGGGCGCGC GCTCGGCCGG GCGCGTGCAG TCAGTGGCAC TGCGCCTTGT GTGCGATCGC
GAGCTCGAGA TCGAGAAGTT CGTTCCGCGC GAATATTGGT CGCTGATCGC CACGCTGGCG
ACGCCGCGCG GCGACACGTT CGAAGCGCGG CTGGTCGGCG CCGACGGCAA GAAGATCCAG
CGGCTCGACA TCGGCACCGG CGCGGAAGCC GAAGACTTCA AGCAGGCGCT GAACGCGGCG
AGCTACACGG TCGCCACCGT CGATGCCAAG CCGGCGCGGC GCAATCCGCA GGCCCCGTTC
ACCACCTCGA CGCTGCAGCA GGAGGCGAGC CGCAAGCTCG GCTTCGCGCC GGCGCACACG
ATGCGCATTG CGCAGCGTCT CTATGAAGGC ATCGACATCG GCGGCGAGAC CACCGGTCTC
ATCACCTATA TGCGAACCGA CGGCGTGCAG ATCGACGGCT CGGCGATCAC CCAGGCGCGC
AAGGTGATCG GCGAGATCTA CGGCAACAAA TATGTGCCGG ACAGCCCGCG CCAGTACCAG
ACCAAGGCCA AGAACGCCCA GGAAGCGCAC GAGGCGATCC GCCCGACCGA TTTGTCGCGC
AAGCCCGCGG ACCTGCGCAA GCGGCTCGAT GACGACCAGG CCAAGCTCTA TGAGCTGATC
TGGACCCGCA CCATCGCCAG CCAGATGGAG TCGGCCGAGC TCGAGCGCAC CACCGTCGAC
ATCATCGCCA AGGCAGGCGG TCGCACGCTG GAACTGCGCG CCACCGGCCA GGTCGTCAAG
TTCGACGGCT TCCTCGCGCT CTATCAGGAA GGCCGCGACG ACGAGGAGGA CGAGGACAGC
CGCCGACTGC CGCAGATGAG CCCGAACGAG CCACTGAAGC GTCAGAACCT CGCGGTCACT
CAGCACTTCA CCGAGCCGCC ACCACGCTTC TCGGAAGCCT CTCTGGTCAA GCGCATGGAG
GAACTCGGCA TCGGCCGGCC CTCGACCTAC GCCTCGATCC TCGATGTGCT GAAAGCCCGC
GGCTATGTGA AGCTCGAGAA GAAGCGGCTG CATGGCGAGG ACAAGGGTCG CGTCGTGATC
GCGTTCCTGG AGAACTTCTT CCGCCGCTAT GTCGAGTACG ATTTCACGGC GGACTTGGAA
GAGCAGCTCG ACCGCATCTC CAACAACGAG ATCGCCTGGC AGCAGGTGCT GAAGGATTTC
TGGACCGGCT TCATCGGCGC CGTCGACGAC ATCAAGGATC TGCGCGTCGC GCAGGTGCTC
GATGCGCTCG ATGAGATGCT GGGGCCGCAC ATCTATCCGC CGCGCGCCGA TGGTGGCGAC
GTCCGGCAAT GCCCGACCTG CGGCACCGGA CGGCTCAACC TCAAGGCCGG CAAGTTCGGC
GCCTTCGTCG GCTGCTCGAA CTATCCGGAA TGCCGCTACA CCCGCCCGCT CGCCGCCGAC
AGCGAGGCCG CGGCCGATCG CATTCTCGGC CAGGACCCGG ATTCGGGCCT CGACGTCGCC
GTCAAGGCCG GCCGCTTCGG CCCCTACATC CAGCTCGGCG AGCAGAAGGA CTATGCCGAG
GGCGAGAAGC CCAAGCGCGC CGGCATTCCC AAGGGCACGC AGCCCTCGGA CGTCGATCTC
GATCTCGCGC TGAAGCTGCT GTCGCTGCCG CGCGAGATCG GCAAGCATCC GGAGACCGGC
CTGCCGATCA CCGCGGGCCT CGGCCGCTTC GGGCCGTTCG TGAAGCACGA CAAGACCTAT
GCGAGCCTGG AGGCCGGCGA CGAGGTGTTC GATATCGGCC TCAACCGTGC GGTCACCCTG
ATCGCCGAAA AGGTCGCGAA GGGCCCGAGC AAGCGCTTCG GCGCCGATCC CGGCAAGGCG
CTGGGTGATC ATCCCTCGCT CGGCCCGGTC GCCGTGAAGG CCGGCCGCTA CGGCGCCTAT
GTCACCGCTG GCGGCGTCAA CGCCACCATT CCCGGCGACA AGGAGAAGGA TACGATCACG
CTCGCCGAGG CGATCGCGCT GCTCGACGAG CGCGCGGCCA AGGGCGGCGG CAAGGCCAAG
GGCGCCAAAA AGGCTGCGAA GCCGGCCAAG GCGGCCGCGA AGCCGAAGGC CGGCGGCGAC
GACGACTCGC CGAAGCCGGC AAAGAAGGCC GTCGCGAAGA AGGCTGCGAC GAAGCCGAAA
TCAGAGTCCA CCAGCAAGGC GCGCGCGCCG GTTGCCAAGG CGGCCAAGAC ATCGGCCAAG
CCTGCGACCA AGGCGACGCC CAAGAAGAGC GCCGGCAAGG CCCGCGGATG A
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| Protein sequence | MNIVIVESPA KAKTINKYLG SSYEVLASFG HVRDLPAKNG SVDPDENFRM IWEVDPKAAG
RLNDIAKSLK NADRLILATD PDREGEAISW HVLEVLKEKR ALKDQKIERV VFNAITKQAV
SEAMKHPRQI DGALVDAYMA RRALDYLVGF TLSPVLWRKL PGARSAGRVQ SVALRLVCDR
ELEIEKFVPR EYWSLIATLA TPRGDTFEAR LVGADGKKIQ RLDIGTGAEA EDFKQALNAA
SYTVATVDAK PARRNPQAPF TTSTLQQEAS RKLGFAPAHT MRIAQRLYEG IDIGGETTGL
ITYMRTDGVQ IDGSAITQAR KVIGEIYGNK YVPDSPRQYQ TKAKNAQEAH EAIRPTDLSR
KPADLRKRLD DDQAKLYELI WTRTIASQME SAELERTTVD IIAKAGGRTL ELRATGQVVK
FDGFLALYQE GRDDEEDEDS RRLPQMSPNE PLKRQNLAVT QHFTEPPPRF SEASLVKRME
ELGIGRPSTY ASILDVLKAR GYVKLEKKRL HGEDKGRVVI AFLENFFRRY VEYDFTADLE
EQLDRISNNE IAWQQVLKDF WTGFIGAVDD IKDLRVAQVL DALDEMLGPH IYPPRADGGD
VRQCPTCGTG RLNLKAGKFG AFVGCSNYPE CRYTRPLAAD SEAAADRILG QDPDSGLDVA
VKAGRFGPYI QLGEQKDYAE GEKPKRAGIP KGTQPSDVDL DLALKLLSLP REIGKHPETG
LPITAGLGRF GPFVKHDKTY ASLEAGDEVF DIGLNRAVTL IAEKVAKGPS KRFGADPGKA
LGDHPSLGPV AVKAGRYGAY VTAGGVNATI PGDKEKDTIT LAEAIALLDE RAAKGGGKAK
GAKKAAKPAK AAAKPKAGGD DDSPKPAKKA VAKKAATKPK SESTSKARAP VAKAAKTSAK
PATKATPKKS AGKARG
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