| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4405 |
|---|
| Symbol | secF |
|---|
| ID | 5153130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 4617508 |
|---|
| End bp | 4618515 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640559213 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | YP_001240350 |
|---|
| Protein GI | 148255765 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0338927 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.256135 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACACACT GGGTTCTTAT CGGGCTTGGC ATCCTGATCG CGGTGCTGAC GGTGGTCAGC
GCGCTCGGCC TGCTGCCGTC GCTGCGCATC GTCCCCGACG ATACGCATTT CGATTTCACG
CAGTTCCGTC GCATCAGTTT CCCGATCTCG GCGACGCTGT CGATCATTGC CATCGTGCTG
TTCTTCACGC ACGGCTTGAA CTTCGGCATC GATTTCAAGG GCGGCACGCT GCTCGAAGTC
CGCGCGAAAT CGGGGACTGC CGACATTGCC AGCATGCGGA GCGAGCTGTC CAAGCTCAAT
CTCGGCGAAG TCCAACTGCA GCAGTTCGGC GGTCCGGCGG ATGTCCTGAT CCGCTTCGCC
GCGCAACCGG GCGGCGACAG CGCGCAGCAG GAGGCCGTCA ACAAGGTGCG CGGCGCACTG
GGCGATACGG TCGATTATCG CCGCGTCGAG GTGCTCGGTG CGCGCGTGTC GGGCGAACTG
CTGGCGATGG GCATGCTCGG CCTGATGCTC GCGATCGTGT CGATCCTGAT CTATCTCTGG
TTCCGGTTCG AATGGCAGTT CGCGCTCGGC GCCATGATCG CCAACGTCCA CGACATCGTG
CTGACGATCG GCTTCATGTC GATCAGCCAG GTCGATTTCG ACCTCACCAG CATCGCGGCG
CTGCTGACCA TTCTCGGCTA CTCGCTCAAC GACACCGTCG TCATCTACGA CCGGATCCGC
GAGATGCTGC GGCGCTACAA GAAGATGCCG ATGCCGCAGC TGCTCAACGA ATCGATCAAC
TCGACGCTGT CGCGCTCGAT CATCACCCAC GTCACGGTGA CCCTGGCGCT GCTGGCGCTG
CTGCTGTTCG GCGGCACCGC GATCCACAGC TTCACCGCCG TCATGATGTT CGGCGTCGTG
CTGGTCGGCA CCTACACCTC GATCTTCATC GCGGCGCCGA TCCTGATCTA TCTCGGCGTG
GGAACCGTGC GCGGCGATCA GGTCGACGAG CCGAAGAAGA AGCCTTGA
|
|---|
| Protein sequence | MTHWVLIGLG ILIAVLTVVS ALGLLPSLRI VPDDTHFDFT QFRRISFPIS ATLSIIAIVL
FFTHGLNFGI DFKGGTLLEV RAKSGTADIA SMRSELSKLN LGEVQLQQFG GPADVLIRFA
AQPGGDSAQQ EAVNKVRGAL GDTVDYRRVE VLGARVSGEL LAMGMLGLML AIVSILIYLW
FRFEWQFALG AMIANVHDIV LTIGFMSISQ VDFDLTSIAA LLTILGYSLN DTVVIYDRIR
EMLRRYKKMP MPQLLNESIN STLSRSIITH VTVTLALLAL LLFGGTAIHS FTAVMMFGVV
LVGTYTSIFI AAPILIYLGV GTVRGDQVDE PKKKP
|
|---|
| |