| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4368 |
|---|
| Symbol | ppiA |
|---|
| ID | 5152557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 4583577 |
|---|
| End bp | 4584140 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640559179 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase A (rotamase A) |
|---|
| Protein accession | YP_001240316 |
|---|
| Protein GI | 148255731 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.453503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.424324 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGAG CTCTTGCTTT CGTTGTTGCT CTCGTCTTCG CGTTGCCAGC GCTGGCGCAA
TCATTGCCGG CTGGTCTCGA CAAGCAGAAT GCGCTGGTCA TCGACACCAC CAAAGGCCGC
ATCATCATCA AGCTGCGCAC CGATCTGGCG CCGCAGCATG CCGAGCGGCT GAAGACGCTG
GCGCGTGAGG GCTTCTACAA CAACGTGCCG TTCCACCGCG TGATGGACGG CTTCATGGCC
CAGACCGGCG ATGGCCAGAA CTTCAATGGC ACCGGCGGCT CGAAATATCC GAACCTGAAG
CAGGAGTTCT CCCAGACGCC GTTCAAGCGC GGCACCGTCG GCATGGCGCG GCGCGGCGAC
AGCAACGATT CAGCCAATTC GCAGTTCTTC ATCTGCTTCG GCGACGCGTC GTTCCTGAAC
GGCCAGTACA CCGTGATCGG TGAGGTCGTG CAGGGCATGG ATGTCGTCGA CAAGCTCAAG
AAAGCGCCTC CGGGCTCGGC CGGCGGAGCC GTCACCGACC CGGACAAGAT GGTGAAGGTG
CAGGTCGCCT CCGATATCAA GTAG
|
|---|
| Protein sequence | MIRALAFVVA LVFALPALAQ SLPAGLDKQN ALVIDTTKGR IIIKLRTDLA PQHAERLKTL
AREGFYNNVP FHRVMDGFMA QTGDGQNFNG TGGSKYPNLK QEFSQTPFKR GTVGMARRGD
SNDSANSQFF ICFGDASFLN GQYTVIGEVV QGMDVVDKLK KAPPGSAGGA VTDPDKMVKV
QVASDIK
|
|---|
| |