| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3945 |
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| Symbol | |
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| ID | 5151056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 4139548 |
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| End bp | 4140933 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640558780 |
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| Product | putative outer membrane protein tolC precursor |
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| Protein accession | YP_001239921 |
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| Protein GI | 148255336 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.8738 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.222307 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGGGG TGAAGGTCGT CACCGCAGCG GCGGCTGCGG TCCTCGTGAT GGCTTGCGCA
GGCCCGACGC CTGCGTTGGC CGACACGATC GAGGCTGCGC TGGTGCGCGC CTATCAGAGC
AACCCGCAGC TGAACGCGCA GCGAGCTCTC GTTCGCGCCA CCGACGAAGG CGTGCCGCAG
GCACTTTCGG GCTACCGGCC GAAGGTCAAT CTTCAAGCAT CGGGTGGAGT TCAGTATCAG
GACGGGCAGG TCGCGCCCGG GACTGCGGCG GCCCATGGCC TATTGAGGCC CCGCAGCGTC
GGCCTGACCG TGAACCAGAC GCTTTACAAC GGCCAGCAGA CGGCGAACGG CGTCCGCAAG
GCCGAGGCGA GTGTGTCGGG TCAGCGCGAG GCCCTCAGGG TGCTCGAACA GTCGGTGCTG
CTGCAGGCTG CGACCATCTA TATGGATTAT CTGCGCGATG CGGCGATCGT CGAGGTTCAG
CGCAGCAATA CGCGGGTTCT GGAACAGACG CTCAAACAGA CGCGCGATCG CTTCAATGTG
GGCGAGGTCA CGCGCACCGA CGTTGCGCAG TCCGAAGCGC AACTCGCAGC CGGCCGCACG
CAGCAACTGA CGGCCGAATC CAATCTGACG GCCACGCGCT CGAACTTCCG CCGTATCATC
GGCAACGATC CCGAGAACCT CGCGCCGGGC TCTCCCGTCG ATCGTTACCT GCCGCCCTCG
CTGCAGCAAT CGATCGAGAC GGCGCTGACC GAGAGCCCCA GCGTAACCTC GGCGATGTAT
GGCATCGACG TTCAATATCT GCAGGTCAAG ATCAACGAAG GAGCCTTGCT GCCGACCGTG
ACCGTCCAGG CCTCGGCAAC GCAGGCCTAC GAATCGCAGC TGACCTCCTA TCGCTCCTTC
AGCGCCGGCG CGGCCGCACA GCTCACTGTG CCGATCTATC AGGGCGGCGG CGAATATGCC
TTGATCCGGC AGTCGAAGGA GACGCTGGCG CAGCAACGTC TCGCGCTCGA GCAGACCCGC
GACCAGGTCC GGTCCGACGT GGTTTCGGCC TGGGGCAAGC TGCTCGCCGG CAAGGCGCAG
GTGCAGTCGG CACAGGCGCA GGTGGCTGCC TCGGAAATCG CCCTGAACGG CGTTCGCGAG
GAGGCCAAGG CCGGCCAGCG TACGACGCTC GACGTCCTCA ACGCGCAGCA GGCGCTTGTC
AATGCGCGGA ACTCGCTTGT GAACGCCCAG CATGACCGCG TCGTTGCATC CTACACCGTG
CTGCAGACGG TCGGTCGCCT GTCGCCGCAA GTGCTGCGGC TGCCCACGAC GACGTATGAT
CCAACCGTGC ACTACCAGCA GATTCGTGAC AGTTGGGCTG GCGTCCGCAC TCCCGACGGC
CGTTAG
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| Protein sequence | MFGVKVVTAA AAAVLVMACA GPTPALADTI EAALVRAYQS NPQLNAQRAL VRATDEGVPQ
ALSGYRPKVN LQASGGVQYQ DGQVAPGTAA AHGLLRPRSV GLTVNQTLYN GQQTANGVRK
AEASVSGQRE ALRVLEQSVL LQAATIYMDY LRDAAIVEVQ RSNTRVLEQT LKQTRDRFNV
GEVTRTDVAQ SEAQLAAGRT QQLTAESNLT ATRSNFRRII GNDPENLAPG SPVDRYLPPS
LQQSIETALT ESPSVTSAMY GIDVQYLQVK INEGALLPTV TVQASATQAY ESQLTSYRSF
SAGAAAQLTV PIYQGGGEYA LIRQSKETLA QQRLALEQTR DQVRSDVVSA WGKLLAGKAQ
VQSAQAQVAA SEIALNGVRE EAKAGQRTTL DVLNAQQALV NARNSLVNAQ HDRVVASYTV
LQTVGRLSPQ VLRLPTTTYD PTVHYQQIRD SWAGVRTPDG R
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