| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3916 |
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| Symbol | pbpC |
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| ID | 5149775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 4101857 |
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| End bp | 4104094 |
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| Gene Length | 2238 bp |
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| Protein Length | 745 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640558749 |
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| Product | penicillin-binding protein 1C (PBP-1C) |
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| Protein accession | YP_001239892 |
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| Protein GI | 148255307 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.787281 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAGG GTCAGACCAG CGGCAATGGA CGCATGACGG AGCCAGACAC TCCGTCGTCA
TGGCCGGGCT TGACCCGGCC ATCCACGGCC GCATGCGAGA ACGGCGTGGA TGCCCGGGTC
AAGCCCGGGC ATGACGAGAG GAGGGGGCGA GTTGCAAAAC GTCTCGCGGC GATTGGGTTG
ACGTTGATCG TGGTCGTCGC GACGGCTCTC ACCGCTTACA CCATCTCCCT CGGCCCGCTG
CCGCTGCAGG ACGCCAAAGC GCTGTCCACC ACGGTGGTCG ATCGCCACGG CAAGCTGCTG
CGCGCCTATG CGATGGCGGA TGGGCGTTGG CGGTTGCCGG TCAGCGCGCA GAAGGACGTC
GACCCGACCT ATCTGAAGCT GCTGTTCGCC TATGAGGACC AGCGCTTCTA TGACCACCAC
GGCGTCGATC CGCGCGCGCT GGCGCGGGCG GCGATTCAAT TCGGCTCACA CGGTCATATC
GTGTCCGGCG GCTCGACCAT CACGATGCAG CTGGCGCGGT TGCTGGAGCC GCGGCGGCAG
CGGTCGCTGC ACGCCAAGCT CCGGCAGATC GTGCGCGCGC TCGAGCTCGA GCGGAAGCTC
GGCAAGGACG AGATCCTCGA TCTGTATCTG ACGCTCGCGC CGTATGGCGG CAATCTCGAA
GGCATCCGCG CCGCCTCGAT CGCCTATTTC GGCAAGGAGC CGAAGCGCCT CTCGCTGGCC
GAGGCCGCAC TCCTGGTCGC GCTGCCGCAG TCGCCGGAGA CGCGCCGGCT CGATCGCCAC
CCGGAGGCGG CGCGCCGCGG CCGCGACCGC GTGCTCGATC GCATGGTGTC GGAGAACGTC
ATCTCCGCCG AGGACGCCGC GCAGGCGAAG GCGCAACCGG TGCCGGCCTT CCGCAAGCCG
ATGCCGATCC TGGCGCCGCA TGCCGCCGAC CAGGCCACGG CGGTCGTGAA GGACCGGCCG
ATCATCCGGC TGACATTGGA CGCATCGCTG CAGAAGGTGC TGGAGCCGCT GGCGCGCGAC
CGCGCCGCCG CGCTGGGGCC GAACATCTCG GTCGGCATCA TCGTGATCGA CAATGACAGT
GGCGACGTGC TCGCCCATGT CGGTTCTGCG GATTATTTCG ACGAGCGGCG GGCCGGGCAG
GTCGATATGA CGCGCGCGGT GCGCTCGCCC GGCTCGACCC TGAAGCCGTT CATCTATGGC
TTGGCCTTCG AGGACGGCTT CGTGCATCCG GAGAGCCTGA TCGAGGACCG CCCGGTACGC
TTCGGTTCCT ACGCGCCGGA GAATTTCGAC ATGACGTTCC AGGGCACAGT GCCGGTGCGC
AAGGCGCTGC AGCTGTCGCT GAACGTGCCG GCGATCGTGC TGCTCGACCG CGTCGGCGCC
AGCCGGCTGT CGTCGCGGCT CAAGCAGGCC GGCGGCAATC TGGTGCTGCC GAAGGACGAG
GCGCCCGGTC TGGCGATGGG ACTCGGCGGG GTCGGCGTGA CCCTGCAGGA CCTCGCACAG
CTCTATGCTG GATTTCCGCG GCTCGGCACC ACCAAGCCGC TGCGCCAGAT CATGACGGCC
GAGGTCCTGA CGGCCGAGGA CGCCGACACC AGGGAACCGA TGCGGCTGAT GGATCCGGCC
GCCGCCTGGC AGGTCGGCAA CGTGCTGCTC GGCACGCCGC CGCCGGAAAA TGCCGCGCGC
AACCGCATCG CCTTCAAGAC CGGCACCAGC TACGGCTATC GTGACGCTTG GTCCGTGGGC
TTTGACGGCC GCATGACGAT CGGCGTCTGG GTCGGTCGTC CCGACGGCGC GCCAGTGCCG
GGCCTGATCG GCCGTGTCGC CGCTGCGCCG ATCCTGTTCG ACGCCTTCGC GCGCAGCGGC
AAGCTGCCGG CGGCCCTGCC CAAGCCGCCC AAGGGGGCGC TTATTGCCGG CAATTCAAAG
TTGCCACTGC CGCTGCGCCG GTTCCGTCCG ATCGGCGAAC TGCTACGGAC CGGCGCCGAG
CAGGCCCCGC ACATCCAGTT CCCGCTCAAC GGCTCGCGCA TCGATGTCGA TCGGACCGCG
GGACCGGAGG CCGCCGTGAT GCCGGTGAAA GTCTCCGGCG GCGTGCTGCC GCTGACCATG
CTGGTCAATG GCCTGCCGGT CGGCGAGATC GACAGCCGGC GCCAGCGCCT GATCGATCCG
CCCGGGCCGG GCTTTGCCCG GCTGACCGTC ATCGACGCCA CGGGCGCGGC GGACACAGTT
GTGGTCAGAA TCCAATGA
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| Protein sequence | MSEGQTSGNG RMTEPDTPSS WPGLTRPSTA ACENGVDARV KPGHDERRGR VAKRLAAIGL
TLIVVVATAL TAYTISLGPL PLQDAKALST TVVDRHGKLL RAYAMADGRW RLPVSAQKDV
DPTYLKLLFA YEDQRFYDHH GVDPRALARA AIQFGSHGHI VSGGSTITMQ LARLLEPRRQ
RSLHAKLRQI VRALELERKL GKDEILDLYL TLAPYGGNLE GIRAASIAYF GKEPKRLSLA
EAALLVALPQ SPETRRLDRH PEAARRGRDR VLDRMVSENV ISAEDAAQAK AQPVPAFRKP
MPILAPHAAD QATAVVKDRP IIRLTLDASL QKVLEPLARD RAAALGPNIS VGIIVIDNDS
GDVLAHVGSA DYFDERRAGQ VDMTRAVRSP GSTLKPFIYG LAFEDGFVHP ESLIEDRPVR
FGSYAPENFD MTFQGTVPVR KALQLSLNVP AIVLLDRVGA SRLSSRLKQA GGNLVLPKDE
APGLAMGLGG VGVTLQDLAQ LYAGFPRLGT TKPLRQIMTA EVLTAEDADT REPMRLMDPA
AAWQVGNVLL GTPPPENAAR NRIAFKTGTS YGYRDAWSVG FDGRMTIGVW VGRPDGAPVP
GLIGRVAAAP ILFDAFARSG KLPAALPKPP KGALIAGNSK LPLPLRRFRP IGELLRTGAE
QAPHIQFPLN GSRIDVDRTA GPEAAVMPVK VSGGVLPLTM LVNGLPVGEI DSRRQRLIDP
PGPGFARLTV IDATGAADTV VVRIQ
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