| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3885 |
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| Symbol | |
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| ID | 5149528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 4070268 |
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| End bp | 4071989 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640558719 |
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| Product | putative toxin/protease secretion system |
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| Protein accession | YP_001239863 |
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| Protein GI | 148255278 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.557144 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACGA CCACCGCCCG CAGCCCGCTC GGAACCGCAC TGCGGGCCTG CTTTCCCGCG
CTCACCGCGA CCTTCGTTCT CAGCCTCTTC ATCAATGCGA GCATGCTGGC TTCGCCGCTC
TATTCGATGC AGGTGTATGA CCGCGTGCTC ACCAGCCGCA ATCTTGGCAC GCTGGTGATG
CTGACCCTGA TCGTCGGCGT TTTCCTGGTG TTGTACGGCA TCCTCGAATT TGCCCGCTCC
GGGGTGCTGG CGCGCGCCGG CGTCCAGTTC GAAGGCACCC TGCGCCACCC TCTGTTCGAA
ACGATGATGA AGGCTGAGCT GTCACCGCGG CATCGCTTTG GACAGCAGAT CATCCGCGAC
GCCGAGACCA TCCGCGACTG CATCTCGAGC GGCACCGCGG CTATCGCCTG CGACCTGCCC
TGGACACCGG TGTTCGTGGC GCTGTGTTTC CTGCAGCACG CCTATCTCGG CATTCTCTCG
CTGTTGGGAG CGGTCGTCTT GTTCTCGCTG GCGCTGTTGA CCGAGTTTTA CACGCGCTCC
AGCGTTGAGC GCACCAACGC GCTGGCCAAC GAGGCCTCGC GCTTCGTGGC AGCGGCACTG
CGCAATGGCG AGGTCGTGCG CGGCCTCGGC ATGGGCGACA TCGTCATGGA TCGCTGGAGC
TGCCGGCAGT CGGCCATGGT CGATGCCCAC AGCACGCTGG TCGAGCGCGG CGCCGCGATG
CACTCGATCA CCAAATTCGC CCGCATGGCC GTGCAGACGT CGCTGCTCTG CATCGGCGCC
TGGCTCGCGA TCGAGCAGCA GATCTCTCCC GGCGCCATGA TGGCGACATC GATCATCATG
GGCCGCGCGC TGGCGCCGGT TGAACAGGTC GTCGGCCAGT GGAAGCGGAT CATCGCCTTC
CGCTCCGCCT ATCGCCGACT CGAAGAGCTG TTCCAGGCGC TTCCGGTCAC CGCTGCGCCG
ACCGCGCTCC CTGCGCCGCG CGGCGATATC GACGTCGAAA ATGCCGTGGT CTGGCCGCCG
GCGGCAGGCC GCCCGTCGGT CAAGGGGGTC AGCTTCTCGC TCAAGGCCGG CGAGAGCCTC
GCGATTGTCG GCGCCTCCGC CAGCGGCAAG TCCAGCATGG CGCGTGCGAT GGCTGGCGTC
TGGCCGCTGC GCGAAGGTGT GATCCGCATC GATGGCGCAG CCTACAGCCA GTGGGATCAG
AATCGGCTCG GCAAGCATAT CGGCTATCTG CCGCAGGACA TCGAGCTGTT CTCGGGCACG
GTCGCGGACA ACATCGCGCG GCTGGCCAAG GTCGACGAAG CCGCTGTGGT CGCGGCGGCC
AAGGCTGCTG GCGCGCATGA GGTGATCCTG CGTCTGCCCA ATGGCTATGA CACGCCCATC
GGCGAGGGTG GCGTCGCGCT CTCAGGCGGC ATGCGCCAGC GTGTCGGTCT GGCCCGCGCC
CTGTATGGCG ATCCACGCCT GCTGATCCTG GACGAGCCGA ACTCCAACCT CGACGAGGAC
GGCGAGCGGG CGCTGGCCCA TGCTATGGCC CAGGCAAAGG CCGCCGGCCG GACCGTCATC
GTCGTCACGC ATCGCCCGCA GCTTCTCGCG CATGTCGATC GCATCATGGT GATGTCGTTC
GGCAAGTCGC TGGCCTTCGG GGAGCGCGAC GAGGTGATCG CCCGGATGCG CGGTCAGCGC
GTCGTCGTCG CCCACGATCG TGCGGCCGCC ACCGCTGCCT AA
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| Protein sequence | MTTTTARSPL GTALRACFPA LTATFVLSLF INASMLASPL YSMQVYDRVL TSRNLGTLVM
LTLIVGVFLV LYGILEFARS GVLARAGVQF EGTLRHPLFE TMMKAELSPR HRFGQQIIRD
AETIRDCISS GTAAIACDLP WTPVFVALCF LQHAYLGILS LLGAVVLFSL ALLTEFYTRS
SVERTNALAN EASRFVAAAL RNGEVVRGLG MGDIVMDRWS CRQSAMVDAH STLVERGAAM
HSITKFARMA VQTSLLCIGA WLAIEQQISP GAMMATSIIM GRALAPVEQV VGQWKRIIAF
RSAYRRLEEL FQALPVTAAP TALPAPRGDI DVENAVVWPP AAGRPSVKGV SFSLKAGESL
AIVGASASGK SSMARAMAGV WPLREGVIRI DGAAYSQWDQ NRLGKHIGYL PQDIELFSGT
VADNIARLAK VDEAAVVAAA KAAGAHEVIL RLPNGYDTPI GEGGVALSGG MRQRVGLARA
LYGDPRLLIL DEPNSNLDED GERALAHAMA QAKAAGRTVI VVTHRPQLLA HVDRIMVMSF
GKSLAFGERD EVIARMRGQR VVVAHDRAAA TAA
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