| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3516 |
|---|
| Symbol | potF |
|---|
| ID | 5151270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 3669654 |
|---|
| End bp | 3670760 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640558368 |
|---|
| Product | putrescine ABC transporter, periplasmic binding protein |
|---|
| Protein accession | YP_001239515 |
|---|
| Protein GI | 148254930 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0677178 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGCG GCTGCATTCG TTCGGCTCTG GCGCTGGCCG TTGTGACGCT GACGCTCTCG
GCGTCGGCCG GCCATGCCGA AGAGCGCGTC GTCAACTTCT ATAACTGGTC GAACTACATG
GCGCCGGGGG TCCTCGACGA CTTCACCAAG GAGACCGGCA TCAAGGTCGT CTACGACACG
TTCGACGCCA ACGAGACGTT GGAAACGCGG CTGCTCGCCG GCAAGTCCGG CTATGACGTG
GTGGTGCCCA CGGCGTATTT CCTGCAGCGC CAGATCAAGG CCAAGATCTT CCAGCCGCTC
GACAAGACCA AGCTGCCCAA TCTCGCCAAT GCGTGGCCGG TCGTGACCGA GCGTCTCGCC
ACCTACGATC CCGGCAATCA GTTCGCCGCC AACTACATGT GGGGCACGAC CGGCATCGGC
TATAACGTCA AGACGATCGA GAAGATCTTA GGGGCTGGTG CGCGGATCGA CAGCTGGGAC
ATGGTGTTCA AGCCGGAGAA CCTCGCCAAG TTCAAGGATT GCGGCGTCCA CATGCTGGAC
TCCGCCGACG ACATCTTCCC GGCAGCGCTG AACTATCTCG GCCTCGATCC GAACTCGACC
AAGCAGGCCG ACCTCGAGAA GGCCGCCGAG GTGGTCGGCA AGGTCGCTCC ATCAGTGCGC
AAGTTTCATT CGTCGGAATA TTTGAGCGCG CTCGCCACCG GCGAGATCTG CCTCGTCGTC
GGCTGGTCCG GCGACATCAT GCAGGCGAGG AGCCGCGCCG AGGAGGCCAA GAACGGCATC
GAGATCGGCT ATGCGATCCC CAAAGAGGGC GCGCAGATGT TCTTCGACAA TTTCGCAATC
CCCGCCGACG CGCAGCACGT CACCGAGGCG TATGCACTGA TCAACTATCT CTACCGGCCC
GAGGTCGCCG CCAAGAACTC CGACTTCCTG TCCTACGCCA ATGGCAATCT GGCGAGCCAG
AAGCTGATCG ACCCGAAGAT CCTCGGCGAC AAGAACATCT ATCCGGACGA CGCGACGCTG
AAAAAATTGT TCGTCATCAC TGCCCGCGAG CCGGCGACGC AGCGGATCAT CAACCGTCTC
TGGACGAAGG TGAAGACGGG GCGGTGA
|
|---|
| Protein sequence | MTRGCIRSAL ALAVVTLTLS ASAGHAEERV VNFYNWSNYM APGVLDDFTK ETGIKVVYDT
FDANETLETR LLAGKSGYDV VVPTAYFLQR QIKAKIFQPL DKTKLPNLAN AWPVVTERLA
TYDPGNQFAA NYMWGTTGIG YNVKTIEKIL GAGARIDSWD MVFKPENLAK FKDCGVHMLD
SADDIFPAAL NYLGLDPNST KQADLEKAAE VVGKVAPSVR KFHSSEYLSA LATGEICLVV
GWSGDIMQAR SRAEEAKNGI EIGYAIPKEG AQMFFDNFAI PADAQHVTEA YALINYLYRP
EVAAKNSDFL SYANGNLASQ KLIDPKILGD KNIYPDDATL KKLFVITARE PATQRIINRL
WTKVKTGR
|
|---|
| |