| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3415 |
|---|
| Symbol | |
|---|
| ID | 5152326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 3562078 |
|---|
| End bp | 3564120 |
|---|
| Gene Length | 2043 bp |
|---|
| Protein Length | 680 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640558269 |
|---|
| Product | putative outer membrane protein of unknown function |
|---|
| Protein accession | YP_001239416 |
|---|
| Protein GI | 148254831 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.154801 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGATGAAA TGAAGCGGAT TGGTCTCACG AGCGCGGTTC TGAGCCTTGC CCTCGCCATA
CCCGGCCCAA CGGATGCGGC CCCGATCAGG TCTGCAGAGG CAGACATCCA GGCGTGGACC
GGACCGTTCC TCGGGGGTCA TTTCGGATAT GTCGGCGGCG CCTCCAGCTG GAGCGCGAGC
AACGCCGTGA CCACCGTCAG CGGCTCGACC GGCGTGTTCA ATTCCTACGA CGTCTTCAAG
GGTACCGGCA GCTACCTCTT CGGTCTTCAG GCCGGCTATA ATTGGACCCT GCCGTCCCGC
CTGGTACTCG GGGTCGAGGC CGATGTGTCG ACTCCCAATA CCGTTGCGGG CGAGCGGACG
GTGACGTCGG CGTCCGCAGG CACGGCCAGC TATCGCGAGA CCGTGCTTGC CATGGGAACC
GCGCGCGCCA GGCTCGGCTA CGCCTTCGAT CATTGGCTGC TCTACGCGAC CGGCGGCTTT
GCCTGGTCCT ACGACAGGTT GGAACGCACG CAACTCGCAG GCCTGCCGCT GGTCGGCAGC
GCCGTCGCCG GCACAGTCGA TACGGCGCTG ACATGGCGCC TCGGCTGGGT TGCCGGCCTG
GGCGCCGAGC TGCCGATCGC GCCGCACTGG ACAGCCAAGG CTGAATTCCT CGCCTCCGAG
TTCGGCAGCC ATCGCAAGGC TCTCGCCGCG TCGGCGGAGT CCCTGAGCTC GAACCTCTCG
GTCCAGCGGC TCCAGCTCGG GCTGAACTAT CAGCTCGGCG CCGATGCCAG GGCGGCCGAT
CTCGCCCTCA AGGGCATTGC GCCCGCGGAA GCGGACAACA TCGCGGTGCA CGGGCAGACC
ACCATCGTCA CCCAATATGC GCTGCCGTTT CGCGCGCCCT ATGCCGGGCA GAACAGCCTC
TCTCCCAACC AGGTGCGCGA GACCTTCGAC GCGGATCTCT TCGTCGGCGT GCGCCCTTGG
GAGGGCGGCG AGATCTGGAT CAACCCGGAG ATCGACCAGG GCTTCGGCCT CAACGGCACG
TTCGGCGTCG CGGGCTTCCC GAGCGCCGAG GCCTACAAGG TCGGCGCCAC CTATCCCTAT
GCCCGCGTCC CGCGCGCCTT CCTGCGCCAG ACCATCGATC TCGGCGGCGA GGTCCAGAAG
GTCGAGTCCG GGCCGATGCA GTTCGCTGGC TCGCAGACCT CCGATCGGCT GGTGCTCACG
GTCGGCAAGT TCAGCGTCGT CGATATCTTC GACTCCAACA AATACGCGCA CGACCCGCGC
GGTGACTTCC TCAACTGGAC CCTGGTCAAC ACCGGCGCGT TCGACTATGC GGCCGATGCC
TGGGCCTTCA CCTATGGGGC CGCGGCCGAG TGGTACACCG GACCGTGGAC ATTGCGCGCC
GGCGTCTTCG ATGGCCCCGT CGTTCCGAAC AGCAGCAATC TCGATCCGAC CTTCGGCCAG
TTCCAGATGG TCGGCGAGGT CGAGCGCCGC TATCAGCTGT TCGGCCAGCC CGGCAAGATC
GCCATGACCG GGTATCTCAC ACGCGCGCGC ATGGGCAATT TCCAGACCGC CGTCGATCTC
GCCAATCTCA CGGGGGCTGC GCCGGATCTC TCGCTGGTCC GGTCCTACAC GAGCAAGCTC
GGACTGGCCG GCAATATCGA GCAGCAGATC GTCCCCGGCG TCGGCCTGTT CGCGCGCGCC
GGCTATACGC CGGGGCGGCT CGAGGCGTAC GCATTTACCG ATGCCGACGC CACGCTTGCG
GGCGGCGCAT CGATCTCGGG AAAATTCTGG AACCGGCCGA ACGACACGCT CGGAATAGCC
GGCATCCGCA ACATGATTTC TGCAACGCAC CAGGCCTATT TCGCCGCGGG CGGATACAGC
GCGTTGATCG GCGACGGGCA GCTCCCCCAC CCCGGCGCGG AGAAGATCCT CGAGGTCTAC
TACACGCTTC CGATCGCGAC CTGGGCACTC AGTGTCGACT ACCAGTTCAT TGCCAATCCC
GCCTACAACC GCGATCGCGG TCCGATTTCT ATCGTCGCGA CTCGCTTGCA CACGCAATTC
TGA
|
|---|
| Protein sequence | MDEMKRIGLT SAVLSLALAI PGPTDAAPIR SAEADIQAWT GPFLGGHFGY VGGASSWSAS
NAVTTVSGST GVFNSYDVFK GTGSYLFGLQ AGYNWTLPSR LVLGVEADVS TPNTVAGERT
VTSASAGTAS YRETVLAMGT ARARLGYAFD HWLLYATGGF AWSYDRLERT QLAGLPLVGS
AVAGTVDTAL TWRLGWVAGL GAELPIAPHW TAKAEFLASE FGSHRKALAA SAESLSSNLS
VQRLQLGLNY QLGADARAAD LALKGIAPAE ADNIAVHGQT TIVTQYALPF RAPYAGQNSL
SPNQVRETFD ADLFVGVRPW EGGEIWINPE IDQGFGLNGT FGVAGFPSAE AYKVGATYPY
ARVPRAFLRQ TIDLGGEVQK VESGPMQFAG SQTSDRLVLT VGKFSVVDIF DSNKYAHDPR
GDFLNWTLVN TGAFDYAADA WAFTYGAAAE WYTGPWTLRA GVFDGPVVPN SSNLDPTFGQ
FQMVGEVERR YQLFGQPGKI AMTGYLTRAR MGNFQTAVDL ANLTGAAPDL SLVRSYTSKL
GLAGNIEQQI VPGVGLFARA GYTPGRLEAY AFTDADATLA GGASISGKFW NRPNDTLGIA
GIRNMISATH QAYFAAGGYS ALIGDGQLPH PGAEKILEVY YTLPIATWAL SVDYQFIANP
AYNRDRGPIS IVATRLHTQF
|
|---|
| |