| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3271 |
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| Symbol | |
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| ID | 5153756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 3426349 |
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| End bp | 3428208 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640558135 |
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| Product | TRAP-type C4-dicarboxylate transporter small and large permease |
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| Protein accession | YP_001239282 |
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| Protein GI | 148254697 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.373435 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.294977 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGCG TCGACATGTC TCTGACGGCC TCCACCAAGC ACGGCGTCGT CGACGGTCTC
GAACGGGCGC TGACCAGGCT GATCGAGATT CCGGCGATCG TCGCCCTGGT CGCGGAAGTC
GGAATTCTCT TCACCGGCGT GATGTCGCGT TTCGTCTTCA ACCGGCCGCT GACCTGGGCC
GATGAGCTCG CGTCGATCAC CTTTCTCTGG CTCGCCATGT TCGGCGCGGT GCTCGCGCTC
AGCCGCGGTG AGCACATGCG GATGACGGCC CTGGTCGACC GCGTCAGTCC GCGCGTGCGT
GCCGTGCTGG AATGTCTCGC TTTGATGGCG CCGGCCTTGT TCATGGGAAT CCTGCTGCAT
CCGGCTATCG ACTACGCCAA TGGTCAGTCC TTCGTCGAGA CGCCGGCGCT CGGCCTGTCC
GATAGCCTGC GGGCCGGCGC CGTGCCGGTC GGCATCGGCC TGATGCTCGC GACCGCGCTG
CTGCGCATGA CCCGCCACGC CTCGCGCGAT CTCGCGATCG CGCTGGTGCT GCTTGCGACA
GTCGCGCTTG TGCTGTGGGG CACCGCTCCG GCGCTGAAGG CTCTCGGCAA TTGGAACCTG
ATCGTCTTCT TCGCGCTGCT GCTGGGCGCG GCCGTGCTTG CCGGCGTGCC GATCGCGTTC
TGCTTCGGCC TCGCCACCAT TGCCTATCTG CTGACGGTCA CGACCGCGCC GCTCGAGGTC
GTCACCAGCC GGATCGATGA AGGCGTCTCT TCGCTGGTGC TGCTCGCGAT CCCGCTGTTC
ATCCTGCTCG GGCACCTGAT CGTGATGACC CGGATGGCCG AGGCGATGGT CGGCTTCCTC
GTCTCGCTGG TCGGGCATGT CCGGGGCGGG CTGTCCTATG TGCTGCTCGG CGCCATCCTG
CTCGTGTCCG GCATCTCCGG TGCGAAGACG GCCGACATGG CCGCAGTTGC GCCGGTGCTG
TTTCCCGACA TGAAGCGGCG CGGCATTCAT GATGGCGAGC TGGTGTCGCT GCTCGCCGCC
TCCGGCGCGA TGGCCGAGAC CATCCCGCCG TCGATCGTGC TGATCATCAT CGGCTCGGTG
GCCGGCGTCT CGATCTCGGC GCTGTTCACC GGTGGCATTC TGCCAGGCCT GGTGTTGGCG
GCGGCGCTGG CGATCGTTGC CAAGCGGCGC ATGGTCGAGC CGGAGAGCGT CATTCGTCCG
CGCCCGTCCT GGGGCACGAT CCGCGCCGCG CTCATCACAG CGATCCCCGC TCTGCTGCTG
CCGGTGCTGA TCCGGACCGC CGTCACGGAA GGCGTGGCGA CCGCGACCGA GGTGTCGACC
ATCGGCATCG CCTATGCCGT CATCGTCGGG CTGCTCGTCT ACCGCCGCTT CGACTGGCGC
AAGCTCTACC CGGCGCTGGT CCACACTGCG GCCTTGTCGG GCGCGATTCT CTTCATCATC
GGCGCGGCCA CCGCGATGGC CTGGGCGCTG ACCCAGTCGA ACTTCTCGCA TGCGCTGGCG
GCGATGATGA CATCGGTTCC CGGCGGCAAA TACGGCTTCC TCCTGATCTC CATCGCCGTG
TTCGTCCTGC TCGGCAGCAT TCTCGAAGGT CTTCCCGCAA TGGTCCTGTT CGGGCCGCTG
CTGTTCCCGG CCGCCAAGCT GCTCGGCGTG CACGAGGTGC ACTACGCGAT GGTGATCATC
CTCGCGATGG GCATCGGCCT GTTCGCGCCG CCTTTCGGGC TCGGCTACTA CGCGGCGTGC
TCGATCGGCC AGATCGATCC CAATGCCGGA CTGGCGCGCA TCTGGCCCTA TCTCGGCGCG
CTGGTGCTCG GCCTTCTGCT CGTCGCCTTC ATCCCGTGGC TGTCGATCGG TTTCCTCTGA
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| Protein sequence | MNSVDMSLTA STKHGVVDGL ERALTRLIEI PAIVALVAEV GILFTGVMSR FVFNRPLTWA
DELASITFLW LAMFGAVLAL SRGEHMRMTA LVDRVSPRVR AVLECLALMA PALFMGILLH
PAIDYANGQS FVETPALGLS DSLRAGAVPV GIGLMLATAL LRMTRHASRD LAIALVLLAT
VALVLWGTAP ALKALGNWNL IVFFALLLGA AVLAGVPIAF CFGLATIAYL LTVTTAPLEV
VTSRIDEGVS SLVLLAIPLF ILLGHLIVMT RMAEAMVGFL VSLVGHVRGG LSYVLLGAIL
LVSGISGAKT ADMAAVAPVL FPDMKRRGIH DGELVSLLAA SGAMAETIPP SIVLIIIGSV
AGVSISALFT GGILPGLVLA AALAIVAKRR MVEPESVIRP RPSWGTIRAA LITAIPALLL
PVLIRTAVTE GVATATEVST IGIAYAVIVG LLVYRRFDWR KLYPALVHTA ALSGAILFII
GAATAMAWAL TQSNFSHALA AMMTSVPGGK YGFLLISIAV FVLLGSILEG LPAMVLFGPL
LFPAAKLLGV HEVHYAMVII LAMGIGLFAP PFGLGYYAAC SIGQIDPNAG LARIWPYLGA
LVLGLLLVAF IPWLSIGFL
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