| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3132 |
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| Symbol | speF |
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| ID | 5149524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 3280693 |
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| End bp | 3283050 |
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| Gene Length | 2358 bp |
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| Protein Length | 785 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640557999 |
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| Product | ornithine decarboxylase |
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| Protein accession | YP_001239153 |
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| Protein GI | 148254568 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.297887 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATACT TCCGCCGCTT CACCTTCCTG TTCGCCGCGC CCGTGTTCGA GACCGACGAT
CTCGCCGGCC TGCGCTTCAA CCAGATCATC GAGGAGATCC AGCGCTCGGG TTTCGAGGTC
GTGCGCGCCC GCAAGCTGGA GGATGCCGAG ATCGCGGTGC AGACCGATGC CGCGATCGGC
TGCATGGTGG TGGACTGGGG CAAGAAAGGG CTGGAGGGCA AGACGGCGGC GCTGATCAAC
CTGATGCGGC GGCGCGGTCT GGATTTCCCG ATCATCCTCT TGATTCGCCG CAAGCGGTTC
GAGGACCTGC CGGTCGAGGT GCTCGACTTC ATCGACGGCT ACGTGTTCCT GTCCGAGGAA
ACGCCGGCGT TCATCGCCAA GAACCTGATC AGCCGGCTGA AGCAATATGC CGAGACCTTG
AAGACGCCGT TCTTCGGCAC GCTGGTCGAC TATGCCGAGG AAGGCAACCA GCTCTGGACC
TGCCCCGGCC ATAATGGCGG CGTGTTCTAT AGCCGCAGCC CGATCGGCCG GATCTTCGTC
GAGCATCTCG GCGAAGCCGT GTTCCGCGAC GATCTCGACA ATTCCGTGCT CGATCTCGGC
GACCTGCTGA CCCATGAGGG TCCGGCGCTG CGCGCGCAGA AGGAAGCGGC GCAGATCTTC
GGCGCCGAGA AGACCTATTT CGTCCTCAAC GGCACCTCGA CCTCCAACAA GGTGGTACTG
GGCGCGCTGG TGACCGACGG CGACCTCGTG CTGTTCGACC GCAACAATCA CAAGGCCGCC
CATCATGGCG CGCTGCTGAT CTCCGGCGGC GTTCCGGTCT ATGTTCCCAC CGTCCGCAAT
GCCTGGGGGC TGATCGGGCC GATGCGCTGG GATCTGCTCG ACGAGGAGCA GTTGCGGCAG
CAGATCCGCA ACAACCCGCT GGTGAAGGAC CCCGAGGCCT GGCGCAAGGA ACGGCCGTTC
CGCGTCGCCA TTGTCGAGCA GTGCACCTAT GACGGCACGA TCCACAGCGC CGAAATGATC
CTGCAGCGCA TCGGCCATCT CTGCGACTAC ATCATGTTCG ACGAGGCCTG GGCGGGCTTC
ATGAAATTCC ACCCACTCTA TGCCGGCCGG TTCGCCATGG GACTTGCCGA GCTCGGGCCC
GACGCCCCCG GCATCATCGC CACGCAATCG ACCCACAAGC AGCTCGCGAG CTTCTCGCAG
GCGTCGCAGA TCCACATCAA GGATCGCCAC ATCAAGGGTC AGCGCCGCCG GGTCGAGCAT
CGCCGCTTCA ACGAAAGCTT CATGCAGCAC GCCTCGACGT CGCCGTTCTA TCCGCTGTTC
GCCTCCCTCG ACGTCGGCGC GCAGATGATG AAGGGCCGCT CCGGCGAAGT CCTGTGGGAC
GACACGATCC GGCTCGGGAT CGAATTGCGC AAGAAGATCA GAGCGATGCG CCGGGAATTC
GAGGAAAAGG AGAAGGATCC GGCGCGGCGC TGGTTCTTCG AGCCGTTCGT GCCCGACCGG
GTGTCGATCC CTGACGCCGC CAGCCCGGGC GGGCGGCATG ACGTGGCCTG GGAGGCGATC
TCGACCGATC AGCTCGCGAC CGACGCCGCG CTGTGGCAGC TCGCGCCGGG CGAAGCATGG
CACGGCTTTC CGGATCTCGC GCCCGGCTTC GCCATGACCG ATCCGAACAA GCTCACGCTG
CTCACGCCGG GCTTCGACCG CACCACCGGC GGCTACGCCG ACCACGGCAT CCCGGCGCCG
ATCGTCGCGC AATATCTGCG CGAGAACCGC ATCGTGGCCG AGAAAAATGA CCTCAACTCG
CTGCTCTTCC TGTTGACCCC CGGCGTCGAG GCCAGCAAGG CCGGCACCCT GATCAGCGGG
CTCGTCGCCT TCAAGCGGCT GCACGACGAC AATGTGCTGC TGGAGGACGC CATTCCCGAG
TTCACCCGGC GCCGCTTCGG CCGCTACGGC AAGGTGCGGC TGCGCGACCT CTGCGGCGAG
ATGCACCGGT TCTACCGCGA GGCCGAGGTG AGCGCGCTGC AAGCCAGGCA GTTCCAGCCG
CAGCATCTGC CGGAGATCGC GATGTCGCCG CGCGAGGCGG CGCGTGCGCT GATGCGCAAC
GAGGTCGACT ATCTGCCGAT CGCCCAGATC GACGGACGCA TCGCGACGAC GCCCTTCGTG
GTGTATCCGC CGGGCATTGC CACCATCGTT CCGGGCGAGC GGCTGTCCGA CCGCGCCCGG
CCGATGATCG ATTACCTCAA GATGTTCGAA CGCGCCTTCA ACACGTTTCC GGGCTTCGAC
GTCGAGATTC AGGGATTGTA CAAGGAGATC GACGAAGCTG GCCGGATTCG GCTCCATACC
TATGTTTGCG CAGAGTAA
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| Protein sequence | MEYFRRFTFL FAAPVFETDD LAGLRFNQII EEIQRSGFEV VRARKLEDAE IAVQTDAAIG
CMVVDWGKKG LEGKTAALIN LMRRRGLDFP IILLIRRKRF EDLPVEVLDF IDGYVFLSEE
TPAFIAKNLI SRLKQYAETL KTPFFGTLVD YAEEGNQLWT CPGHNGGVFY SRSPIGRIFV
EHLGEAVFRD DLDNSVLDLG DLLTHEGPAL RAQKEAAQIF GAEKTYFVLN GTSTSNKVVL
GALVTDGDLV LFDRNNHKAA HHGALLISGG VPVYVPTVRN AWGLIGPMRW DLLDEEQLRQ
QIRNNPLVKD PEAWRKERPF RVAIVEQCTY DGTIHSAEMI LQRIGHLCDY IMFDEAWAGF
MKFHPLYAGR FAMGLAELGP DAPGIIATQS THKQLASFSQ ASQIHIKDRH IKGQRRRVEH
RRFNESFMQH ASTSPFYPLF ASLDVGAQMM KGRSGEVLWD DTIRLGIELR KKIRAMRREF
EEKEKDPARR WFFEPFVPDR VSIPDAASPG GRHDVAWEAI STDQLATDAA LWQLAPGEAW
HGFPDLAPGF AMTDPNKLTL LTPGFDRTTG GYADHGIPAP IVAQYLRENR IVAEKNDLNS
LLFLLTPGVE ASKAGTLISG LVAFKRLHDD NVLLEDAIPE FTRRRFGRYG KVRLRDLCGE
MHRFYREAEV SALQARQFQP QHLPEIAMSP REAARALMRN EVDYLPIAQI DGRIATTPFV
VYPPGIATIV PGERLSDRAR PMIDYLKMFE RAFNTFPGFD VEIQGLYKEI DEAGRIRLHT
YVCAE
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