| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3010 |
|---|
| Symbol | |
|---|
| ID | 5152642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 3146057 |
|---|
| End bp | 3147205 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640557884 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001239038 |
|---|
| Protein GI | 148254453 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.359257 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCACGA CGGCACCGCC TCTTTCACCT TCGATCGTTG CCGACACGCG CGGCGTCAAG
CCGCCGCCGT CTCGCGACGT TCGCGCTCGC CGCGTCGGCC AGCGGCGGCA GATCTATGCC
ATGATCGCGG GCTGCTACCT GATCGATGCC GTCATCCTCC TGATCTACGC GCAGGCCGGC
ACCGTGCCGG CCTCGATCGC GCCGGTCTAC GCAGCCATCG GACTAGCCAC CGTCGCGCTG
TGGACCTTGT TGTCGGAGAG CGGCTTCAAC GAGCGCTTCA GGGACCACTA TTTGGTCGTT
CCGCAGTCGA TCGTGAGCAT GATGTTCACG GTGGCCTTCT GCTACGTCGC GCCCGAGGTC
AGCATCGTGT TCCTGTGCAC GCTCTACCTC GTCGTCGGCT TCAGCTCGCT CCGGGCGACG
CCGCGCCAGA CCGCGATCTG CTGGACCTTC CTGGCACTCG GCCTCGCCGG ACTGTTCCTG
CTAACCGACA AGCCGCTCGG CATGCCCACT GGCGGTGCGC TGGAGCGGCT CGCCACGCTG
CTGGTGTTCG TGCTGACGAT CGCCGGCTGC ATGTTCCTCG GCATCTTCTC GAGTTCGCTG
CGCGAGTCCT TGTATCAGCG CGGCCTGAAG CTGAAAGAGG CGTATCGCCG GATCGAGGAG
CTTGCCGAGC TCGATGAGCT CACCGGCGCG CTCAACCGGC GATCCATCAT GCATGTGCTC
GAGGAGGAGC TGACGCGGTC GCGGCAGACC GGCAAGCCAT GCTCGGTGAT GCTGATCGAC
CTCGATTGGT TCAAGCGCAT CAATGACGAG CACGGCCATC CGACCGGCGA CGACGTGCTG
CGCACCTTTG CCATCACGAT GTTCGCCAAT ATCCGCAGCA GCGATCGGTT CGGCCGCTAT
GGCGGCGAGG AGTTCCTGCT TGTCCTGCCC GGCGCACCAT TAGACCCGGC CTGCCGGCTC
GCCGAGCGCC TGCGCCAGAT CATCGCCGAT CTCGACTGGA GCGCATTCTC GGCCGGCCTG
CAGGTGACAT TCTCGGCCGG CGTTGCGACC TCGCGCGGCG ACGAGACCAC CGAGTCGCTG
TTGTCCCGCG CCGATCGTGC GCTCTACGCA TCGAAGGCCC AGGGACGCAA TCGCGTCACC
CGCGCCTGA
|
|---|
| Protein sequence | MGTTAPPLSP SIVADTRGVK PPPSRDVRAR RVGQRRQIYA MIAGCYLIDA VILLIYAQAG
TVPASIAPVY AAIGLATVAL WTLLSESGFN ERFRDHYLVV PQSIVSMMFT VAFCYVAPEV
SIVFLCTLYL VVGFSSLRAT PRQTAICWTF LALGLAGLFL LTDKPLGMPT GGALERLATL
LVFVLTIAGC MFLGIFSSSL RESLYQRGLK LKEAYRRIEE LAELDELTGA LNRRSIMHVL
EEELTRSRQT GKPCSVMLID LDWFKRINDE HGHPTGDDVL RTFAITMFAN IRSSDRFGRY
GGEEFLLVLP GAPLDPACRL AERLRQIIAD LDWSAFSAGL QVTFSAGVAT SRGDETTESL
LSRADRALYA SKAQGRNRVT RA
|
|---|
| |