Gene BBta_2054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_2054 
SymboldppB 
ID5152854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp2125303 
End bp2126313 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content63% 
IMG OID640556992 
Productpeptide ABC transporter permease 
Protein accessionYP_001238148 
Protein GI148253563 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0359637 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.365039 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTCGAT TCGCGCTGAC CAGATTGAGC CTCGTGGTTC CGACGTTCAT CGGAATCACC 
TTGCTCGTGT TCGTGTTGAT CCGTCTGATC CCCGGGGATC CGATCGAGAC CATGGCCGGC
GAGCGCGGCA TCGATCCCGC CCGCCTCGCG CAGCTTCGCA AAGATTACGG CTTCGATCAG
CCGGTGCTGG TCCAATATGG ATTCTATTTG TCGCGGCTGG TGCATGGCGA CTTCGGCCGC
TCGATCGTCA CGCATGAGCC GGTCATCGCC GAATTCCAGA GCCTGTTTCC GGCCACGGTC
GAATTGTCGA TCTGCGCCAT CCTGTTTGCG CTCTGTATCG GGCTGCCGGC CGGCATTATC
GCGGCGGTGC GGCGCAACTC GATCTTCGAT CACGGCGTGA TGGGGATCTC GCTCACCGGC
TATTCGATGC CGATCTTCTG GTGGGGATTG CTGCTGATCC TGCTGTTCTC GGTACAGCTT
GGGTGGACGC CGGTGTCGGG CCGGATCGCA GTGCAGTACT TCATCGAGCC GGTCACAGGC
TTTCTGCTGG TCGATACGCT GCTTGCCGGC GACGTCGGCG CGTTCCGGTC CGCCCTGTCG
CATCTCGTGC TGCCGACGAT CGTGCTCGGC ACCGTGCCGC TTGCAGTGAT CGCGCGCATG
ACGCGCTCGG CGATGCTGGA GGTTCTGGGC GAGGATTACA TCCGCACCGC CCGCGCCAAG
GGCCTGCCGC GCTTCCGCGT GATCGCGATC CATGCCTTAC GCAATGCCCT GATCCCGGTG
GTGACGGTGA TCGGCCTGCA GGTCGGCGTG CTGTTCACCG GGGCCATCCT CACCGAGACG
ATCTTTTCCT GGCCGGGCGT CGGCAAATGG CTGATCGAGG GCATCAACCG CCGGGACTAT
CCCGTGTTGC AGGGCGGCAC GTTGATGATT GGCGCGGTCG TCATGACTGT CAATCTCCTG
GTTGATCTCG CCTATGGGCT GATCAATCCG CGCATCCGGT ACACGCGATG A
 
Protein sequence
MLRFALTRLS LVVPTFIGIT LLVFVLIRLI PGDPIETMAG ERGIDPARLA QLRKDYGFDQ 
PVLVQYGFYL SRLVHGDFGR SIVTHEPVIA EFQSLFPATV ELSICAILFA LCIGLPAGII
AAVRRNSIFD HGVMGISLTG YSMPIFWWGL LLILLFSVQL GWTPVSGRIA VQYFIEPVTG
FLLVDTLLAG DVGAFRSALS HLVLPTIVLG TVPLAVIARM TRSAMLEVLG EDYIRTARAK
GLPRFRVIAI HALRNALIPV VTVIGLQVGV LFTGAILTET IFSWPGVGKW LIEGINRRDY
PVLQGGTLMI GAVVMTVNLL VDLAYGLINP RIRYTR