| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1982 |
|---|
| Symbol | |
|---|
| ID | 5152232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 2047751 |
|---|
| End bp | 2049325 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640556923 |
|---|
| Product | putative ABC transporter, periplasmic binding protein |
|---|
| Protein accession | YP_001238079 |
|---|
| Protein GI | 148253494 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0990283 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTGGACCG GGCTTCCCGC CGCATTTGCT CAGGAGCCCG TGCGCGGCGG CACTCTGGTG
GCGGTGTTGG TGCCCGAGCC GGGCGTGCTA AGCACCAATT TCGACGTCGG GCAGAACGTC
AGCAACCTTT CGAGCAAGAT CTTCGATGGT CTTATCAAGC TGGGGCCCGA CCTGACGCCG
TTGCCTGAAC TGGCCACTGC CTGGGAGGTC AGCGCAGATG GGCTCACTCT CACTTTCCAT
CTGCGGCGCG GGGTGAAATG GCATGACGGC CAGCCGTTCA CGTCCGCTGA TGTCAGTTTT
TCGATCCAGG AGGTCTGGCG CAAGTTCCAG CCTCGGCTAC GCACGGCTCT CGCCAACGTC
GATGACGTGC TGACCCCGGA CGACTACACC GTCGAGTTCA AGCTCTCCCG TCCAGCTCCG
GTAATCCTGC TCGCGCTCAA CCGCTTGCAG GCACAGATCC TGCCTCGCCA TCTTTATCAA
GAGACCGACA TCCTGCGTAA CCCGCACAAC GTCAAGCCGG TCGGCACGGG TCCGTTCCGG
TTCAAGGACT GGGTGCGCGG CGACCGGATC GTGCTGGAGC GCAATCCCGA TTACTGGGAT
ACTGGCAAGC CTTATCTGGA CGGCGTTATT TTTCGCATCA TTCCGGACGC AGCGGCGCGT
TCCGCCGCCT TCGAACGTGG CGATGTTCAA TACGGCTCGG TGTTTCCGGT GCCGCTCAGC
GACGTCGCGC GGATATCCTC CCTGCCTGGG CTCAAGGTGA TCCATACCGG CTACGAAGCC
TGGGGCACGA CGCTCGGACT TGAGTTCAAC CTGCGAAACC CGCTTCTTCA GGACGTGCGG
GTGCGTCGCG CCGTTGCCCA CGCCGTCGAC CGCGCGCGGG CGATCCAGAC CGCCTATCAC
GGGCTGGGCA AGCCCTCGAC AGGTCCGGTC CCTTCGGCGA TGACGCCGTT CTACACGCCA
GATACGCCGC AATATGCGTA CAACACCGTC GTCGCCGAAC AGCTGCTGGA TCAGGCCGGC
TATCCGCGAA AAGCCGATGG CGTCCGCTTC TCGCTGCACA TCGACGGAAT TCCATTCACC
GACGACACCC GTCGCGTCGC GGAATTCATT CGTCAATCGC TGAAGCGGGT CGGAATCGAT
GTCGAGGTCC GCAATCAGGA TCTGCCGCGC TTCTTCCAGA GAATTTACAC GGAGCGTGAT
TTCGACCTCG CTCTGGTACC GATGTCGGCA ACGGTCGATC CGCAGATCGG GTTGGAGCGC
TACTTCGCCT CGAGCGGTAT CCTCAAAGGG GTGCCCTTCA GCAACGCCAG CGGCTACCAG
AACCCGGAGC TGGACCGGAT CTTCGAGGCT GCGCATGTCG AACTCGACCC AGCCAAGCGG
ATCGAGCTCT ATCGCCAGTT CCAGCGCATC ATTCAGACCG ACCTGCCGGC TTTGCCGTTG
CTCGAGGCAG CTTTCTCCAC CGTCTACTCC GACACAGTGC ACGGTCTTGC GGTTGCACCG
GATTCCGCCG TGGAATCGTT CGCCGGCATC TGGCTTTCGT CCCCCGACGC CAACAGCAAA
TCTGTCAACC GGTAA
|
|---|
| Protein sequence | MWTGLPAAFA QEPVRGGTLV AVLVPEPGVL STNFDVGQNV SNLSSKIFDG LIKLGPDLTP
LPELATAWEV SADGLTLTFH LRRGVKWHDG QPFTSADVSF SIQEVWRKFQ PRLRTALANV
DDVLTPDDYT VEFKLSRPAP VILLALNRLQ AQILPRHLYQ ETDILRNPHN VKPVGTGPFR
FKDWVRGDRI VLERNPDYWD TGKPYLDGVI FRIIPDAAAR SAAFERGDVQ YGSVFPVPLS
DVARISSLPG LKVIHTGYEA WGTTLGLEFN LRNPLLQDVR VRRAVAHAVD RARAIQTAYH
GLGKPSTGPV PSAMTPFYTP DTPQYAYNTV VAEQLLDQAG YPRKADGVRF SLHIDGIPFT
DDTRRVAEFI RQSLKRVGID VEVRNQDLPR FFQRIYTERD FDLALVPMSA TVDPQIGLER
YFASSGILKG VPFSNASGYQ NPELDRIFEA AHVELDPAKR IELYRQFQRI IQTDLPALPL
LEAAFSTVYS DTVHGLAVAP DSAVESFAGI WLSSPDANSK SVNR
|
|---|
| |