| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1922 |
|---|
| Symbol | |
|---|
| ID | 5151360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 1983414 |
|---|
| End bp | 1985021 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640556866 |
|---|
| Product | putative ABC transporter, periplasmic solute-binding protein |
|---|
| Protein accession | YP_001238022 |
|---|
| Protein GI | 148253437 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.92103 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACG GGATCACCAA CTGGACTTCG CGTGACGATG TGCTGGTCGA GGCGGCGATC
CGGCGCGGCG CGTCGCGCCG GGATCTCCTG AAGATGATGT TAGCCAACGG TGTCGCGCTC
GCTGCAGGCA GCACCATCCT CGGCCGCGCC GAGCGCGCTG ACGCGGCAAC GCCGAAGAAG
GGCGGATCAA TCAAGGCGGC GGGATGGTCG ACCTCGACCG CCGACACGCT CGATCCGGCC
AAGGCGTCGT TCTCGACCGA CTATGTCCGC TGCTGCTCGT TCTACAACCG GCTGACGACA
CTCGACAAGA ACGGCGCGGC GCAGATGGAG CTCGCTGAAG CCGTGGAGTC GACGGATGCG
CAGACCTGGA CGGTCAAGCT CAAGAAGGGC GTCACCTTCC ACGACGGCAA GCCGTTGACG
GCTGACGACG TCGTGTTCTC GCTGAAGCGG CATCTCGACA AGGCGACCGG CTCCAAGGTG
GCCAAGATCG CGGCGCAGAT GACCGGCTTC AAGGCGGTCG ACAAGACCAC CGTCGAGATC
ACCCTGGCGA GTCCGAACGC TGACCTGCCG ATGATCCTCG CGCTGCATCA CTTCATGATC
GTGGCCGACG GCACCACCGA CTTCTCCAAG GCGAACGGTA CCGGCGCCTT CGTCCGCGAG
GCTTTCGAGC CGGGCGTGCG CTCGATCGGC GTGCGCAACA AGAACTATTT CAAGGACGGT
CCCTATCTCG ACCAGATCGA GTTCATCGCG ATCACGGAAG AGAATGCGCG CGTCAACGCG
CTGCTCTCCG GCGATATTCA GCTCGCGGCC AGCATCAATC CGCGCTCGCT CCGCCTGATC
GAGGGCAAGG AGGGGATCGC GCTGTCGAAA TCGACGACCG GCAACTACAC CGATCTCAAC
ATGCGGCTCG ATATGGCCCC GGGCAACAAG AAAGATTTCA TCGATGGCAT GAAGCACATC
GTCAACCGCG AGCAGATCGT CAAATCGGTC CTGCGCGGCT TCGGGGTCGT CGGCAACGAC
CAGCCGGTCT CGCCGGCCAA CTTCTTCCAC AATCCCGACC TCAAGCCGAA GCCGTTCGAT
CCGGACAAGG CGAAATTCCT GTTCCAGAAG GCCGGCGTGC TCGGTACGCC GATCCCGGTG
GTCGCATCGG AAGCTGCGAA CTCCGCGATC GAGATGGCGA TGGTGATCCA GGCCTCGGCC
GCGGCGGTCG GACTGACGCT CGACGTGCAG CGCGTTCCGT CGGACGGCTA TTGGGACAAT
TACTGGCTGA AGGCGCCGGT CCATTTCGGC AACATCAATC CGCGGCCGAC GCCGGACATC
CTGTTTTCGC TGCTCTACGC CTCCGAGGCG CCTTGGAACG AGAGCCGCTA CAAGTCCGAG
ACGTTCGACA AGATGATGCT CGAGGCGCGC GGGATGCTCG ACCAGGCCAA GCGCAAGCAG
ATGTATGCCG AGATGCAGGT CAAGATCGCG GAGGAGGCGG GCACCATCAT TCCGGCCTAT
ATCTCCAATA TTGATGCCAC CTCGTCCAAG CTGAAGGGCT TGGAGCCGAG CCCGCTCGGC
GGCATGATGG GATATGCCTT TGCTGAATAT GTCTGGCTCG ATTCGTGA
|
|---|
| Protein sequence | MSNGITNWTS RDDVLVEAAI RRGASRRDLL KMMLANGVAL AAGSTILGRA ERADAATPKK
GGSIKAAGWS TSTADTLDPA KASFSTDYVR CCSFYNRLTT LDKNGAAQME LAEAVESTDA
QTWTVKLKKG VTFHDGKPLT ADDVVFSLKR HLDKATGSKV AKIAAQMTGF KAVDKTTVEI
TLASPNADLP MILALHHFMI VADGTTDFSK ANGTGAFVRE AFEPGVRSIG VRNKNYFKDG
PYLDQIEFIA ITEENARVNA LLSGDIQLAA SINPRSLRLI EGKEGIALSK STTGNYTDLN
MRLDMAPGNK KDFIDGMKHI VNREQIVKSV LRGFGVVGND QPVSPANFFH NPDLKPKPFD
PDKAKFLFQK AGVLGTPIPV VASEAANSAI EMAMVIQASA AAVGLTLDVQ RVPSDGYWDN
YWLKAPVHFG NINPRPTPDI LFSLLYASEA PWNESRYKSE TFDKMMLEAR GMLDQAKRKQ
MYAEMQVKIA EEAGTIIPAY ISNIDATSSK LKGLEPSPLG GMMGYAFAEY VWLDS
|
|---|
| |