Gene BBta_1552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_1552 
Symbol 
ID5152832 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp1635415 
End bp1637211 
Gene Length1797 bp 
Protein Length598 aa 
Translation table11 
GC content62% 
IMG OID640556516 
ProductOmpA-like transmembrane domain-containing protein 
Protein accessionYP_001237674 
Protein GI148253089 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3637] Opacity protein and related surface antigens 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0187168 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.160619 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCCCCCCT TCAAGTCGTC GGTCGGATCG CTCTTCGGCG GCCTGCAGCT CGGCTATAAT 
CGTGAGTTGC CCTCCCGCGT GGTGCTCGGC GTGGAAACTG ACTTGTCGTT CCCGAACTAT
CTCGACTTCG ACGACATCAT CTGGTCGGGC GTGAACGCAA ATGGTCGCGT CACGGAGAAG
GTCGATTATT ACGGCAGCCT TCGTGGGCGG ATCGGATACG CGCCAGCCCG ATGGCTTATC
TACGCGACCG CCGGGCTCGC CTACAGCCAA GGCCGTCTCA CCGAGGATCC GTTTGATCCG
GCGACCCAGA AGAAGATCGG TTTTCGCGCC GGCTGGGTGG CGGGCGCGGG CGTCGAGGCG
CCCGTTGATG GCAACTGGAC CGCTCGGATC GAGTATCTCT ACAGCAATTT CGGCTCGTTG
AACGTGATGC TGCCCTCGGG CACGAGCTAC GGTTCGACCT TCGATCTGCA CACGGTCAGG
CTCGGCCTCA ACCGCAAGCT CGGCGGTTCG GCCAAGGAAC CGAGTGGCGC GGGCGACACG
ATCACCTCGC CCATCTACTG GGAGATGCAG GGCCAGTCGA CCTACATCCA GCAAGGCTAT
CCGGCATTTC GCTCGCCCTA TTACAGCACC AACAGCTTCA CCCCGGGGGC GCAGTCGCGA
GAGACCTGGA GCAACAGCCT GTTCCTCGGC GTTAAGCTGT GGGACGGCGG CGAGTTCTAC
TATAATCCGG AATTGATCCA GGGATATGGC CTGAACGCGA CGTTCGGCGC CGCCGGCTTC
CCGAACGGCG AGGCCCAGAA GTCGAACTTC TCCTATCCTC ATTACATCAC CTCGCGCCTG
TACCTGCGGC AGACCTTCGG CCTCGGTGGT GAGCAGGAGA CGGTCCAAAG TGACTACGGC
CAGATGGCTG GGAAACGCGA CGTCTCGCGC CTCACCTTCC AGATCGGCAA GTTCGCGGTG
CATGACATGT TCGACAACAA CACCTACGCT CAGGACCCGC GCACTCAATT CCTGAACTGG
TCGATCTGGG CGGCCGGCGC GTTCGACTAC CCCGGCGACA TGGTCGGGCT GACCTACGGC
GCGGCGGCGG AATTGAACCA GCAGGCATGG GCCGTGCGCG CCGGCTATTT CCTGGTTGTC
GTCCATCCCA ACACCAATGA CTTCGACATG GAGCTCGGGA AGCGCGGTGG CTATGTCGGA
GAGTTCGAAA CGCGTTATGA AGTCCTGTCG AGGCCGGGCA AGCTGCGCGT CATCGGCTGG
ATGCATGACA CGCTCTCGGG AGGATACCGC GACGCCTTGA ATCTGGCGGC TGCAACGCCC
GGGCTGGACC TCACTACCGC GATCGACCTG ACCCAGCAGG GCCGGATCAA GTACGGCTAT
GTCTTTAATG TCGAGCAGGC GGTCACCGAT GACATCGGCG TGTTCGGGCG CTGGAGCTGG
AACAACGGCA AGAACCAGAT CTCGGCGTTT ACCGATATCG ACTCTAGCCT GTCTGGCGGC
GTATCGATCA AAGGCACCTC GTGGGGCCGT CCCGAGGACA CAGTCGGCCT GGCCGGGGCG
GTCAACGAGA TTTCCAAGGA TCACCGCGAC TTCCTTGCGG CCGGTGGCAT GGGAATCCTG
GTCGGCGACG GCCGCCTCAA CTACCGGCCG GAGCGGATTC TGGAGACCTA TTACACGGTG
AAGGTTGCGA AGGACGCCAC CTTCACCTTC GACTATCAGT TCCTGCAGAA CCCCGCCTAC
AATGCCGATC GCGGACCAGT CTCGGTGTTG TCCGGCCGGG TTCACGCGCA GTTCTGA
 
Protein sequence
MPPFKSSVGS LFGGLQLGYN RELPSRVVLG VETDLSFPNY LDFDDIIWSG VNANGRVTEK 
VDYYGSLRGR IGYAPARWLI YATAGLAYSQ GRLTEDPFDP ATQKKIGFRA GWVAGAGVEA
PVDGNWTARI EYLYSNFGSL NVMLPSGTSY GSTFDLHTVR LGLNRKLGGS AKEPSGAGDT
ITSPIYWEMQ GQSTYIQQGY PAFRSPYYST NSFTPGAQSR ETWSNSLFLG VKLWDGGEFY
YNPELIQGYG LNATFGAAGF PNGEAQKSNF SYPHYITSRL YLRQTFGLGG EQETVQSDYG
QMAGKRDVSR LTFQIGKFAV HDMFDNNTYA QDPRTQFLNW SIWAAGAFDY PGDMVGLTYG
AAAELNQQAW AVRAGYFLVV VHPNTNDFDM ELGKRGGYVG EFETRYEVLS RPGKLRVIGW
MHDTLSGGYR DALNLAAATP GLDLTTAIDL TQQGRIKYGY VFNVEQAVTD DIGVFGRWSW
NNGKNQISAF TDIDSSLSGG VSIKGTSWGR PEDTVGLAGA VNEISKDHRD FLAAGGMGIL
VGDGRLNYRP ERILETYYTV KVAKDATFTF DYQFLQNPAY NADRGPVSVL SGRVHAQF