| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1500 |
|---|
| Symbol | trbB |
|---|
| ID | 5152146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 1588071 |
|---|
| End bp | 1589054 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640556467 |
|---|
| Product | conjugal transfer protein trbB |
|---|
| Protein accession | YP_001237625 |
|---|
| Protein GI | 148253040 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGTGGGGA CGGCACTGGT GAATCATCCC ATTCAATCGA AAGCGGTTTC GCGTGGAGCG
CGCATGCTGC GCACCGCGTT CGGCTCAGCT ATCGCCCGCT TTCTTGAAGA TTCGACCGTC
GTCGAGGTGA TGCTTAACCC CGACGGGCGA TTGTGGATCG ACCGCCTGTC TGTCGGTTTG
GCAGACACCG GACGATTCGT GTCGGCCCAG GACGGGGAGC GCATTGTCCG ATTGGTCGCT
CATCACGTGG GTGCCGAGGT TCACGCAGGC AGCCCGCGCG TCTCGGCTGA ATTACCGGAG
ACAGGGGAGC GCTTCGAGGG ACTATTGCCG CCGGTGGTCG CGGCCCCGTC CTTCGCTATT
CGCAAGCCAG CGGTCGCCGT GTTCACGCTC GACGACTATG TCGCCCAAGG AATCATGATC
TCGTGCCAAG CCGACGCTTT GCGTCGCGCG GTTGGGGCAC GCAAGAATAT TCTCGTGGCT
GGTGGTACCT CCAGCGGCAA GACGACGCTG ACCAACGCGC TATTGGCGGA GGTTGCCAAG
ACTTCGGATC GGGTCATCCT CATTGAAGAC ACGCGAGAGC TGCAGTGCAA GGCACCGAAT
TTGGTGGCGC TCCGCACCAA GGATGGCGTG ATCTCGTTAT CGGAGCTTGT CCGATCGTCG
CTGCGTCTGC GCCCCGATCG GATTCCGATC GGCGAAGTGC GCGGTCCGGA GGCTCTCGAT
TTGCTCAAGG CCTGGGGCAC AGGTCATCCC GGGGGCATCG GCACCATCCA CGCCGGCAGC
GCGATTGGTA CTTTGCGCCG GCTCGAGCAA CTCATTCAAG AAGCGGTTGT CACCGTGCCG
CGCGACCTGA TTGCGGAAAC CATCAACGTC ATCGCTGTGC TTTCCGGCCG CGGCAACGAA
CGCCGGCTCA CCGAGCTCGC CAGTGTCGAA GGTCTCGGAG CTTCGGGCGA CTACGTTCTT
TCAGCCATAG GGGACCCATC ATGA
|
|---|
| Protein sequence | MVGTALVNHP IQSKAVSRGA RMLRTAFGSA IARFLEDSTV VEVMLNPDGR LWIDRLSVGL
ADTGRFVSAQ DGERIVRLVA HHVGAEVHAG SPRVSAELPE TGERFEGLLP PVVAAPSFAI
RKPAVAVFTL DDYVAQGIMI SCQADALRRA VGARKNILVA GGTSSGKTTL TNALLAEVAK
TSDRVILIED TRELQCKAPN LVALRTKDGV ISLSELVRSS LRLRPDRIPI GEVRGPEALD
LLKAWGTGHP GGIGTIHAGS AIGTLRRLEQ LIQEAVVTVP RDLIAETINV IAVLSGRGNE
RRLTELASVE GLGASGDYVL SAIGDPS
|
|---|
| |