| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1068 |
|---|
| Symbol | |
|---|
| ID | 5151805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 1110197 |
|---|
| End bp | 1111681 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640556058 |
|---|
| Product | putative glycosyl transferase |
|---|
| Protein accession | YP_001237226 |
|---|
| Protein GI | 148252641 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
|---|
| TIGRFAM ID | [TIGR03023] Undecaprenyl-phosphate glucose phosphotransferase
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.676615 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGAATG GTTCTTTGAT GTCGATGCGG TCAGAGGTTC GCGATCCGGA GCAAGAGGTT
GCGACCTCAG CGGTTGCGAG AGCCCAAGCT CCGCTTCCAA GCCAGGCGAT CACCTACGTC
CTCGCCACCG CAGACGCGGC GATCATTCTG ATCGCGAGTT TGTCCGCGTG CTTCGCCTAT
CATTGGCTGA CTGACACCCC CATCCCCGAC CTATCCGCGT ATTTTGCGCT GGGCCTCGCC
GCGAGCTTTC TCCACATCGT GCGACTGAGC GGCCTCGCCT ACTACGATCT GGAAAGCGCA
GCGAAGCCCG CGGTCGAGTT CCTCGAGATC ATGTTCTCCT GGCTCACGAC AGCGCTGATG
CTGGCGTTCT TTGCGTTCCT GTTCAAGATC GGCACCGCGT TCTCCAGAGG CGCATTCCTG
TTGTTTCTCG CCGCGGCGCC AGCAGGGCTG CTCGCTGGCA GGAAATTGGC AAAGTACCTG
CTCGAAGATG CAGTTGTCCG TGGCGTGATC GGCCGACGCG ACCTGATTCT TCTCGGCGCC
CCACAGGAGT TGGACGCGCT CGAGCCGAGA GATCTGCTGG TTCTGTTTGG CGCCGCCGAA
GTTCATCGAA TCGCGCTGAG TGCGGCGTCG GACCCGGCGA ATCAGAAGGC CGGCGATCTC
AAAGCCGTGG CGACCGCCGC GAAATTCATG CAGGAACACG ACGTGACGGA AGTCCTGCTC
GTGATCCCCT GGAACTCGCC GGAGCGGCTG GAGTACCTGC GCCAGCAGAT GAAGGCGTTC
CCGGTGTCAG TTCGGCTGCT GCCGGACAAA CAGATTCGCG CCTTGAGCGA TTACGCGCCG
TCTGCCCAGC AGCGCGTCGT CTCGCTGGAG ATCCAGCGCG CGCCGCTGAG CGCCGTGGAG
CGTGGCGTGA AGCGCATGAT GGACATCGTC ATCGGGCTCA CCGCGCTGAT CCTGTTGAGT
CCGATCATCG CGTTGACCGC GATCTTGATC AAACTCGACG GAAAGGGGCC GGTGTTCTTT
CTGCAGAACA GAAAGGGCTT CAATGGCCGG CAATTCGTGA TGTTCAAGTT CCGGACGATG
ACCGTGCTGG AGAACGGCGA CACTGTAACC CAGGCGACGC GGAACGATCC GCGGGTCACG
CGCATCGGAG CCTATCTCCG CAGCGCCAGC ATCGATGAGC TGCCACAGCT GGTCAACGTG
TTGCGCGGCG ACATGTCCCT GGTCGGGCCG CGTCCTCACG CCATCGCCCA TGACAATCAG
TTCGAGCGCC TGCTGCAGGA TTATGCGTTC AGGCATCACG TCAAGCCAGG GATGACCGGC
TGGGCGCAAG TGAATGGTCT TCGCGGCGCG ACCCCCTCGC TTGATCTGAT TTCCCGGCGC
GTCGAGATGG ACCTCTGGTA CATCAACAAT TGGAGCCTCT GGCTCGATGT TCAGATCATC
ATGAAGACCT TCTTCGAAGT GGTGCGAAAG AGGAACGCGT TCTGA
|
|---|
| Protein sequence | MRNGSLMSMR SEVRDPEQEV ATSAVARAQA PLPSQAITYV LATADAAIIL IASLSACFAY
HWLTDTPIPD LSAYFALGLA ASFLHIVRLS GLAYYDLESA AKPAVEFLEI MFSWLTTALM
LAFFAFLFKI GTAFSRGAFL LFLAAAPAGL LAGRKLAKYL LEDAVVRGVI GRRDLILLGA
PQELDALEPR DLLVLFGAAE VHRIALSAAS DPANQKAGDL KAVATAAKFM QEHDVTEVLL
VIPWNSPERL EYLRQQMKAF PVSVRLLPDK QIRALSDYAP SAQQRVVSLE IQRAPLSAVE
RGVKRMMDIV IGLTALILLS PIIALTAILI KLDGKGPVFF LQNRKGFNGR QFVMFKFRTM
TVLENGDTVT QATRNDPRVT RIGAYLRSAS IDELPQLVNV LRGDMSLVGP RPHAIAHDNQ
FERLLQDYAF RHHVKPGMTG WAQVNGLRGA TPSLDLISRR VEMDLWYINN WSLWLDVQII
MKTFFEVVRK RNAF
|
|---|
| |