| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0851 |
|---|
| Symbol | |
|---|
| ID | 5154507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 874862 |
|---|
| End bp | 876532 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640555848 |
|---|
| Product | MFS family sugar transporter |
|---|
| Protein accession | YP_001237018 |
|---|
| Protein GI | 148252433 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.734503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.560347 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATGT CAACAATGGT CGCCACACAA GCGAGATCGG GAGGCATGAC GAAGGACGAG
CGCTTCGTCA TTCTGGCGTC CTCTCTCGGC ACTGTCTTCG AGTGGTACGA TTTCTACCTT
TACGGGTCCC TCGCCTCGAT CATCGGCGCA CAGTTCTTCA GTAGCTATCC GCCGGCCACC
CGCGACATTT TCGCGCTGCT GGCCTTCGCC GCCGGCTTCC TGGTCCGCCC GTTCGGCGCC
ATCGTGTTCG GCCGCATCGG CGACATCGTC GGCCGCAAAT ACACCTTCCT GGTCACGATC
CTGATCATGG GTCTGTCGAC CTTCATCGTC GGCATCTTGC CGAACGCCGA GACCATCGGC
TTCGCCGCGC CGGTGATCCT GATCGGTCTA CGCCTGTTGC AGGGCCTCGC GCTCGGCGGT
GAGTATGGCG GCGCCGCCAC GTATGTCGCC GAGCATGCGC CGATGGGCAA GCGCGGCTAC
TACACCTCCT TCATCCAGAC GACAGCCACG ATGGGCCTGT TCCTGTCACT GCTGGTGATC
CTGTTCACCC GCACCATCAT CGGCGAGGCC GACTTCGCCA AATGGGGCTG GCGCGTGCCG
TTCCTGGTGT CCGTGCTGCT GCTCGGTGTC TCCGTCTGGA TCCGTCTGCG CCTCAACGAA
TCGCCCGTGT TCCAGAAGAT GAAGGAAGAG GGCAAGAGCT CCAAGGCGCC GCTGACGGAA
GCGTTCGCGA ACTGGGGCAA CGGCAAGATC GTGCTGCTCG CCCTGATCGG CGCCACCATG
GGCCAGGGCG TCGTCTGGTA CACCGGCCAG TTCTACGCGT TGTTCTTCCT GCAATCGATC
CTGAAGGTCG ACGGCTACAC CGCCAACCTG CTCATCGCCT GGTCGCTGCT GCTCGGCACC
GGCTTCTTCA TCGTGTTCGG CATCCTCTCC GACAAGATCG GCCGCAAGCC GATCATCATG
GGCGGCTGCC TGATCGCGGC GCTCACCTTC TTCCCGATCT TCAAGATGAT CACCAGCAAC
GCCAACCCGG CGCTGGAGAA GGCGATCGAG TCGGTGAAGG TGGAGGTCGT GGCAGATCCG
GCCGGTTGTG GAGACCTGTT CAACCCGGTC GGCACCCGCG TCTTCACCGC GCCTTGCGAC
ACCGCCCGCG CCTTCCTGGC CCAGTCCTCG GTCAAGTACT CGACCGTTCC TGGCCCGGCC
GGCTCCGGCG TGAAGGTCAC CTTGAACGGC AAGGAAGTGC CCTACACCGA CGCCAAGACC
AGCAATCCGG CCCTGACGGC TGCGATCGCC GACGCCGGCT ATCCGAAGGC CGGCAACCCG
GGGATCGTGA AGATGGCGCA TCCGTTCGAC GTCTTCCGTC CGCAGGTCGC CGCGATCATC
GGCCTGCTGT TCATCCTGGT GATCTTCGTC ACCATGGTGT ACGGCCCGAT CGCCGCGATG
CTGGTCGAAC TGTTCCCGAC CAAGATCCGC TACACCTCGA TGTCGCTGCC CTACCACATC
GGCAACGGCT GGTTCGGCGG CCTGCTGCCC GCAACGGCCT TCGCGATCGT GGCCTCGACC
GGCGACATCT ATGCCGGCCT CTGGTACCCG ATCACGTTCG CCGTCATCAC CGCGGTGGTC
GGCTTCCTGT TCCTGCCGGA GACCAAGGAC GTCGATATCC AGTCGACCTG A
|
|---|
| Protein sequence | MPMSTMVATQ ARSGGMTKDE RFVILASSLG TVFEWYDFYL YGSLASIIGA QFFSSYPPAT
RDIFALLAFA AGFLVRPFGA IVFGRIGDIV GRKYTFLVTI LIMGLSTFIV GILPNAETIG
FAAPVILIGL RLLQGLALGG EYGGAATYVA EHAPMGKRGY YTSFIQTTAT MGLFLSLLVI
LFTRTIIGEA DFAKWGWRVP FLVSVLLLGV SVWIRLRLNE SPVFQKMKEE GKSSKAPLTE
AFANWGNGKI VLLALIGATM GQGVVWYTGQ FYALFFLQSI LKVDGYTANL LIAWSLLLGT
GFFIVFGILS DKIGRKPIIM GGCLIAALTF FPIFKMITSN ANPALEKAIE SVKVEVVADP
AGCGDLFNPV GTRVFTAPCD TARAFLAQSS VKYSTVPGPA GSGVKVTLNG KEVPYTDAKT
SNPALTAAIA DAGYPKAGNP GIVKMAHPFD VFRPQVAAII GLLFILVIFV TMVYGPIAAM
LVELFPTKIR YTSMSLPYHI GNGWFGGLLP ATAFAIVAST GDIYAGLWYP ITFAVITAVV
GFLFLPETKD VDIQST
|
|---|
| |