| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0794 |
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| Symbol | matE1 |
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| ID | 5154148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 814028 |
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| End bp | 815332 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640555792 |
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| Product | cation efflux pump, DNA-damage-inducible protein |
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| Protein accession | YP_001236962 |
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| Protein GI | 148252377 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00344653 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTTCGACA TCGCAGGGCC TGCGATGATC GCGAACCTGA CCACGCCCTT GATCGGCATT
GTCGCGACCA CCGCGATCGG CCGGCTCGGC GCGCCCGCGA TGCTCGGCGG CGTGGCCATG
GCCTCGGTGA TCTTCGACTG CCTGTTCTGG CTGTTCGCAT TCCTGCGCGC GAGCACGCTC
GCCTTTACCG CGCAATCGCT CGGCGCCGGC GAACGCGACG AGATGCTGAT GGTCCTGATC
CGCGGCCTGG CGCTGGCGGG GCTGGTCGGG CTCGGGCTGA TCGCGGTGCA GGTGCCGCTC
GCGGCGGTGC TGTTCGAGCT GATGGGCGGC AGCGAGGCCG TGCGCGGCGC TGCCCGGACC
TATTTCATGA TCCGGATCTG GTCGGCGCCG CTGGCGCTCG CCAACTATGT CCTGCTCGGC
TGGCTGGTCG GCCTGGCGCG GGCCCGGCTC GCGCTCGCGG TGCAGGTCGC GATCAATCTG
ATCAACATGG CGGCGACCAT CCTGCTGGTG CAGGTGATGG AGACCGGCAT TGCCGGTGCG
GCGATCGCCG CCGTGATCGC GGAGACCTTC GGGGTCGCGA TCGGCCTGCT GCTGGCGCAT
CGGCTGGTCA GGCCCGCGGC TGCGCTGTCG CGGCGCGCGC TGTTCGACCG CGCCAAGCTG
ATGCACATGA TGGCAGTCAA CCGCGACATC ATGATCCGCA CCGCGGCGAT GATCGTGGCA
TTCCTGTTCT TTACCTCGCA GGGCGCGCGC GCCGGCGACA CGACGCTCGC GGCCAACGCA
GTGCTGAACA ATTTCCTGCT GGTCGCGGCC TTCTTCCTCG ACGGGCTCGC CAACGCCGCC
GAGCAGCTCT GTGGCTATGC CTATGGCGCG CGCAACAGAG ACGCGTTTGC CGGCGCCACC
CGCCTGGTGC TCGCCTGGGG CTTCGGCTTC GCGCTCGTTG TCGCCGTGGT GCTGGCGCTG
TTCGGACCGG CGCTGATCGA CGTGATGACG GCGAGTCCAG CCGTGCGCAG CGCCGCGCGC
GACTATCTGC CCTATGTGGT GGCCTCGCCG CTGCTGTCGG TGTTCGCCTT CGCGTTCGAC
GGCGTCTATA TCGGCGCCAC CTGGGCCCGC GACATGCGCA ACCTCATGGT GGCGGCGCTG
GCCGTGTTCC TCGCGATCTG GTTTGCGCTG CGCGGCTTCG GCAATACGGG GCTGTGGATC
GCGATGCTCG GCTTCTACGC CGCCCGCGGC GGCTTCCAGG CCGCGCGCTA TCCAGCGCTG
CTGAAGGCGT CGTTCGGCAA AGGCCCGGCT GGCCCAGCAT CGTAA
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| Protein sequence | MFDIAGPAMI ANLTTPLIGI VATTAIGRLG APAMLGGVAM ASVIFDCLFW LFAFLRASTL
AFTAQSLGAG ERDEMLMVLI RGLALAGLVG LGLIAVQVPL AAVLFELMGG SEAVRGAART
YFMIRIWSAP LALANYVLLG WLVGLARARL ALAVQVAINL INMAATILLV QVMETGIAGA
AIAAVIAETF GVAIGLLLAH RLVRPAAALS RRALFDRAKL MHMMAVNRDI MIRTAAMIVA
FLFFTSQGAR AGDTTLAANA VLNNFLLVAA FFLDGLANAA EQLCGYAYGA RNRDAFAGAT
RLVLAWGFGF ALVVAVVLAL FGPALIDVMT ASPAVRSAAR DYLPYVVASP LLSVFAFAFD
GVYIGATWAR DMRNLMVAAL AVFLAIWFAL RGFGNTGLWI AMLGFYAARG GFQAARYPAL
LKASFGKGPA GPAS
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