| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0768 |
|---|
| Symbol | metZ |
|---|
| ID | 5153556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 789076 |
|---|
| End bp | 790284 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640555767 |
|---|
| Product | O-succinylhomoserine sulfhydrylase |
|---|
| Protein accession | YP_001236938 |
|---|
| Protein GI | 148252353 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR01325] O-succinylhomoserine sulfhydrylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00770297 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.00215966 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAAGT CCCCCGCGAA GGCGCCCGCG TCGTTCGCCC AATATCGCCC CGAAACCCGG
CTGGTGCATT CCGGCAGCTT GCGTTCCGAA TTCGGCGAGA CCGCCGAGGC GCTCTACCTG
ACGCAAGGTT TCGTCTACGC CACCGCCGAG GAATGCGAGG CGCGCTTCAA GGGCGAGGAT
CCCGGCTTCA TCTATTCGCG CTTTTCCAAC CCGACCACGG CGATGTTCGA GCGCCGCATG
ATCGAGCTCG AAGGCGCCGA GGCCTGCCGT TCCGCGGCCA CCGGCATGGC TGCAGTGACC
ACCGCGATCC TGGCCCCGCT GCGCGCCGGC GACCACGTCG TTGCCGCGAA GGCGCTGTTC
GGCTCCTGCC GCTACGTCGT CGAGGACCTG CTGCCGCGCT ACGGCATCGA GTCGACGCTG
GTCGACGGGC TCGATCTCGA CCAGTGGCAG AAGGCGGTCC GGCCGAACAC GAAATCGTTC
TTCCTGGAGA GCCCGACCAA TCCGACGCTC GACGTGATGG ACATTCCGGC GATCGCCGAG
ATCGCGCATG CCCACGGCGC GCGGCTGATC GTCGACAATG TGTTCGCAAC GCCGATCTGG
CAGAGCCCGC TCGCGCTCGG CGCCGATGTC GTCGTGTACT CCGCGACCAA GCATATCGAC
GGTCAGGGCC GCTGCCTGGG CGGCGTGATC CTGTCGTCGG AGGCCTTCAT CGCCGAACAC
ATCCACAATT TCATGCGCCA GACCGGCCCG TCGATCTCGC CCTTTAACGC CTGGGTGCTG
CTCAAGGGCC TGGAGACGCT GGCCGTCCGC GTTCGCGCGC AGACCGAGAA CGCGGCGAAG
GTTGCGGATT TTCTCGCGAC GCATCCGAAG ATCTCGCGGC TGATCTATCC GGGCCGCGAG
GACCATCCGC AGGCCGCGAC CGTCAGGAAG CAGATGCGCG CCGGCTCGAC CCTGGTCGGC
TTCGAGGTCA AGGGCGGCAA GGCCGGCGCG TTCCGCACGC TTAACGGCCT CAAGCTCGCG
CGCATCTCCA ACAATCTCGG CGACTCCAAG ACGCTGGTCA CGCATCCCGC GACGACGACG
CATCAGCGGC TGTCGCCGGA GGCGCGCGCC GAACTCGGCA TCAGCGAAGG CTTCATCCGC
TTCTCCGCAG GCCTCGAACA TGCAGACGAC CTGATCGCGG ATCTCGACGC CGCCCTGGGG
GCGGCGTAG
|
|---|
| Protein sequence | MSKSPAKAPA SFAQYRPETR LVHSGSLRSE FGETAEALYL TQGFVYATAE ECEARFKGED
PGFIYSRFSN PTTAMFERRM IELEGAEACR SAATGMAAVT TAILAPLRAG DHVVAAKALF
GSCRYVVEDL LPRYGIESTL VDGLDLDQWQ KAVRPNTKSF FLESPTNPTL DVMDIPAIAE
IAHAHGARLI VDNVFATPIW QSPLALGADV VVYSATKHID GQGRCLGGVI LSSEAFIAEH
IHNFMRQTGP SISPFNAWVL LKGLETLAVR VRAQTENAAK VADFLATHPK ISRLIYPGRE
DHPQAATVRK QMRAGSTLVG FEVKGGKAGA FRTLNGLKLA RISNNLGDSK TLVTHPATTT
HQRLSPEARA ELGISEGFIR FSAGLEHADD LIADLDAALG AA
|
|---|
| |