Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_0512 |
Symbol | ipdC |
ID | 5156217 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 502005 |
End bp | 503642 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640555527 |
Product | indole-3-pyruvate decarboxylase |
Protein accession | YP_001236700 |
Protein GI | 148252115 |
COG category | [G] Carbohydrate transport and metabolism [H] Coenzyme transport and metabolism [R] General function prediction only |
COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
TIGRFAM ID | [TIGR03394] indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.396725 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.198842 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGCTC TCGCTCATGT GCTGCTTGCC GCTCTGAGGG ACCACGGCGC CCGCGAGATC TTCGGCATTC CCGGAGATTT CGTTCTGCCT CTGTTCAAGG TCATCGAGGA GAGCAGGATC CTGCCAGCCG TCACGCTCAG TCACGAGCCG GCGGTCGGCT TTGCGGCGGA TGCCGCGGCC CGTTATCACG GCGGCCTCGG CGTTGCCGTC GTGACCTATG GCGCCGGCGC GTTCAACCTC GTGAACTCGG TCGCCGGCGC CTATGCCGAG CGCTCGCCCG TCGTGGTCAT TGCCGGCGCG CCCGGCGCGC GCGAGCGCGT GTCCGGCTTC CTGCTGCACC ATCAGGCCCG CACGGTGGAT ACCCAGCTTG CGGTGTTTAA GGAGATCACC TGCGATCAGG CCGTTCTCAG CGATCCGGCC ACCGCGCCGG CGCAGATCGC GCGTGTGCTG CGCAGCGCAA AGGAAATGTC GCTGCCGGTC TATCTCGAAT TCCCGCGCGA CATGGTCGAT GTCGAAGCCG AGCCGGTGGT GCCGCTGCCG CCGCGGCGGG CCGATCAGGA CGCGCTCGGC GAGTGCGTCG AGGAGATCCT CGGCCGTATC GCGCGCGCCG AGCGCCCGGT CATCGTGGTG GACGTGGAGA TCCGGCGTTA TGGAGTCGAG GCCAGGATCG CGGCGCTGGC GCGCAAGCTG GGCCTGCCCC TGGTCACGAC CTTCATGGGA CGCGGCTTGC TCGACCAGGC CGACGATGTC GTCGCCGGCA CCTATCTCGG CGCCGCGGGA AATCCCGCGA TCACCGCGCT GGTCGAAGAT GCCGACCTGG TGCTGATGCT CGGCGTGATC CTGTCGGATA CGAATTTTGC GCTGTCAAAC CGGGCACCGG ACCCGCGCCG CATGATCCTG GCGGCGAGCT GCGAGGTGCA GATCGGGCAT CATGTCTATC GTGACATGCC GCTCGGCGAT CTCATCGATG CGCTGGACGA TCGCGCAACA CCGCGCGCGG CGCCGGCCGA TCGCGTCCGG CAGCGCTCGG CCTATCCGCG CGGTCTGGTC GCCGACAGCA ATCCGATCGC GCCGTCGGAC ATCGCGACCG CGATCAACGA CATGTTCGAC CGCCATGGCC GGATGCCGAT GACCGCCGAT ATCGGCGACT GCCTGTTCAC GGCGATGGAG ATCGATAACA CGGCGCTGGC TGCGCCCGGC TACTATGCCG GGATGGGGTT TGGCGTGCCG GCCGGCATCG GGGTCGCGGC GACCGGGCTG CGGCCGCTGA TCCTCGTCGG CGATGGGGCG TTTCAGATGA CCGGCTGGGA GCTCGGCAAT TGCCGGCGCT ACGGTCTCGA TCCGATCGTG GTGCTGTTCA ACAATTGCAG CTGGGAGATG CTGCGGGTGT TCCAGCCGGA ATCGCGCTTC AACGATCTCG ACGACTGGCA CTACGCCGAC ATTGCCAAGT CCATCGGCGG TGTCGGCGAA CGCGTCACCA CGCGAGCCGA GCTTGTTGCC GCGCTCGAAC GCGCCGTGGA ACGGCGCGGG CAGTTCTCGC TGGTCGAAGT GATGCTGCCC CGTGGCAAGA CGTCGGACAC GCTGGCGCGC TTTGTTGCCG GCTTCAAGTC GGCGCGTGAG CGGATGGCCG GAGGATGA
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Protein sequence | MPALAHVLLA ALRDHGAREI FGIPGDFVLP LFKVIEESRI LPAVTLSHEP AVGFAADAAA RYHGGLGVAV VTYGAGAFNL VNSVAGAYAE RSPVVVIAGA PGARERVSGF LLHHQARTVD TQLAVFKEIT CDQAVLSDPA TAPAQIARVL RSAKEMSLPV YLEFPRDMVD VEAEPVVPLP PRRADQDALG ECVEEILGRI ARAERPVIVV DVEIRRYGVE ARIAALARKL GLPLVTTFMG RGLLDQADDV VAGTYLGAAG NPAITALVED ADLVLMLGVI LSDTNFALSN RAPDPRRMIL AASCEVQIGH HVYRDMPLGD LIDALDDRAT PRAAPADRVR QRSAYPRGLV ADSNPIAPSD IATAINDMFD RHGRMPMTAD IGDCLFTAME IDNTALAAPG YYAGMGFGVP AGIGVAATGL RPLILVGDGA FQMTGWELGN CRRYGLDPIV VLFNNCSWEM LRVFQPESRF NDLDDWHYAD IAKSIGGVGE RVTTRAELVA ALERAVERRG QFSLVEVMLP RGKTSDTLAR FVAGFKSARE RMAGG
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