| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0409 |
|---|
| Symbol | atpC |
|---|
| ID | 5155637 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 413238 |
|---|
| End bp | 413645 |
|---|
| Gene Length | 408 bp |
|---|
| Protein Length | 135 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640555427 |
|---|
| Product | F0F1 ATP synthase subunit epsilon |
|---|
| Protein accession | YP_001236601 |
|---|
| Protein GI | 148252016 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) |
|---|
| TIGRFAM ID | [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.384593 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACTT TCCACTTCGA TCTCGTCTCG CCGGAAAAGA TCGCCTTCTC GGGCGAGGTC
GACCAGGTCG ACGTTCCCGG CCAAGAGGGT GATTTCGGCG TGCTCGCCGG TCATGCGCCG
TTCGTCGCCA CTTTGCGGCC TGGCATCCTG ACCGTCACGG CCGGCGGAAC GCAGCAGAAG
ATCATCGTGC TCGGCGGCCT CGCCGAGATC TCGGAGAAGG GGCTGACCAT CCTCGCCGAC
GTCGCGACGT CGCTGAAGGA GCTGGACCAG ACCGCCTTCG CGGCCGAGAT TTCGGGCATG
GAAGCCAAGC TGAACGAGAA GCAGGGCAAT GAGCTCGATC GCGCGATCGA GCGGCTCGAC
CACTTCAAGA CGATTCAGCA GCAGCTCAAC ACGACGGCGC TGCACTGA
|
|---|
| Protein sequence | MATFHFDLVS PEKIAFSGEV DQVDVPGQEG DFGVLAGHAP FVATLRPGIL TVTAGGTQQK
IIVLGGLAEI SEKGLTILAD VATSLKELDQ TAFAAEISGM EAKLNEKQGN ELDRAIERLD
HFKTIQQQLN TTALH
|
|---|
| |