Gene BBta_0398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_0398 
Symbollpd 
ID5154512 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp400760 
End bp402163 
Gene Length1404 bp 
Protein Length467 aa 
Translation table11 
GC content65% 
IMG OID640555417 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_001236591 
Protein GI148252006 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.175439 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAACT ACGATCTCGT CGTCATCGGC ACCGGACCCG GTGGTTATGT TTGCGCCATC 
CGCGCGGCGC AGCTCGGCAT GAAGGTGGCC GTGGTCGAGA AGAACGCCAC CCTCGGCGGC
ACCTGCCTCA ATGTCGGCTG CATGCCCTCG AAGGCGCTGC TGCATGCCTC TGAATTGTTC
GAGGAGGCCG GGCATTCCTT CGCCAAGATG GGCATCAAGG TGCCGGCGCC GGAGATCGAC
CTGCCGGCGA TGATGAACTT CAAGCAGCAG GGCATCGACG GCAACGTCAA GGGCGTCGAG
TTCCTGATGA AGAAGAACAA GATCGACGTG CTCCAGGGCA AGGGCAAGAT CCTCGGCACC
GGCAAGGTGC AGGTGACCGG CAATGACGGC ACCGCGCAGA CCGTCGAGAC CAAGAACATC
GTGATCGCCA CCGGCTCCGA CATCGCGCGC CTCAAGGGCA TCGAGATCGA CGAGAAGCGC
ATCGTTTCCT CGACCGGCGC GCTGTCGCTG GACAAGATTC CGTCGAGCCT GCTCGTCGTC
GGTGCTGGCG TGATCGGGCT CGAGCTCGGC TCGGTGTGGC GCCGCCTCGG CGCCAAGGTC
ACCGTGGTTG AATTCCTCGA CCGTATCCTG CCCGGCATGG ACCTCGAGAT CGCCAAGCAG
TTCCAGCGCA TCCTCGAGAA GCAGGGCTTT GCGTTCAAGC TCGGCGCCAA GGTGACCGGT
GTCGACACGT CAGGGGCAAC GCTCGCCGCG ACGATCGAGC CGGCGGCCGG CGGCGCGGCT
GAGAAGATCG AGGCCGACGT GGTCCTCGTC GCGATCGGCC GCGTGCCGTA CACCGACGGC
CTCGGCCTGC AGGAGGCTGG CGTCGTGCTC GACAATCGCG GCCGCGTGCA GATCGATCAC
CATTTCGCGA CCAGCGTGCC CGGTGTCTAC GCGATTGGCG ATGTCGTCGC CGGTCCGATG
CTCGCGCACA AGGCCGAGGA TGAGGGCGTG GCGGTGGCCG AGATCCTGGC CGGCCAGGCC
GGTCATGTGA ACTACGACGT GATTCCGGGC GTCGTCTACA CCACGCCGGA AGTGGCCTCC
GTCGGCAAGA CGGAAGACGA GCTCAAGCAG GCCGGTGTTG CGTACACCGT CGGTAAGTTT
CCGTTTACCG CGAACGGCCG CTCCAAGGTC AACCAGACCA CTGACGGTTT CGTGAAGATC
CTTGCAGATG CGAAGACCGA TCGCGTGCTC GGCGCGCACA TCATCGGCCG CGAGGCCGGT
GAACTGATCC ACGAAGCCGC CGTATTGATG GAGTTCGGTG GCTCTGCCGA GGATCTGGCG
CGCACCTGCC ACGCCCATCC GACGCGGTCG GAGGCCGTCA AGGAAGCCGC TCTTGCGGTC
GGCAAGCGTG CCATCCACAT GTGA
 
Protein sequence
MANYDLVVIG TGPGGYVCAI RAAQLGMKVA VVEKNATLGG TCLNVGCMPS KALLHASELF 
EEAGHSFAKM GIKVPAPEID LPAMMNFKQQ GIDGNVKGVE FLMKKNKIDV LQGKGKILGT
GKVQVTGNDG TAQTVETKNI VIATGSDIAR LKGIEIDEKR IVSSTGALSL DKIPSSLLVV
GAGVIGLELG SVWRRLGAKV TVVEFLDRIL PGMDLEIAKQ FQRILEKQGF AFKLGAKVTG
VDTSGATLAA TIEPAAGGAA EKIEADVVLV AIGRVPYTDG LGLQEAGVVL DNRGRVQIDH
HFATSVPGVY AIGDVVAGPM LAHKAEDEGV AVAEILAGQA GHVNYDVIPG VVYTTPEVAS
VGKTEDELKQ AGVAYTVGKF PFTANGRSKV NQTTDGFVKI LADAKTDRVL GAHIIGREAG
ELIHEAAVLM EFGGSAEDLA RTCHAHPTRS EAVKEAALAV GKRAIHM