Gene BBta_0102 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_0102 
Symbol 
ID5149596 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp106906 
End bp107886 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content66% 
IMG OID640555129 
ProductS49 family peptidase 
Protein accessionYP_001236308 
Protein GI148251723 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID[TIGR00706] signal peptide peptidase SppA, 36K type 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCTTG ATTCGGATGT GATCGTCGAT CGCCGCAGGC TGCGCCGCAA ACTGACCTTC 
TGGCGCGTCG TCGCGGTGCT GATCGCGATC GCAGCGCTAT CCGCCATCGG TCTTGCGATG
TCGCCGCGCG GCCGCACCGC GCTCTCGACG TCAGGCTCGA TCGCCCGCGT CAACATCGAA
GGCCTGATCC GCAGCGACCA CGAGCGCGTC GAGGCGCTGG AGCGGCTGGA GAACTCATCG
GCCGAGGCCG TGATCGTTCA CATCAATTCG CCGGGCGGAA CCACTGCCGG CTCCGAACAG
CTCTACGATT CCCTGGTGCG GCTGAAGGCG AAGAAGCCGC TGGTCGTGGT CGTCGAAGGA
CTCGCCGCGT CCGGCGGCTA TATCGGCGCG ATCGCCGCGG ACCACATCGT CGCGCAGCAG
AGCTCGCTGG TCGGCTCGAT CGGCGTGCTG TTCCAATATC CGAATGTCAG CGAATTGTTG
AAGACGATCG GCGTCAAGGT CGAAGAGGTG AAGTCCTCGC CGCTGAAGGC GGCGCCGAAC
GGCTATGAAC CGACCAGCCC GGAAGCGCGC GCCGCGCTCG ACGCCCTGGT CAAGGATTCC
TACGCCTGGT TCCGCGGCCT CGTGAAGGAT CGCCGCGGGA TGGATGACGC GCTGCTCGAG
AAGGTGGCGG ACGGCCGCGT CTTCACCGGC CGGCAGGCGA TCGAACTCAA GCTGATCGAC
GAACTCGGCG ACGAGAAGAC GGCAGTGGCC TGGCTCGTGG CCAACAAGAA CGTCAAGAAG
GATCTGCCGG TGCGCGACTA CAAGCTCGTG CCGCGGTTCG GTGACTTGAC CTTCCTGCGC
ACCGCGACCT CCCTGGTGCT CAATGCCGTC GGCCTGTCCG GGATCGCGCA TCAGATCGAG
CAGGCCGGGG TCGTGCAGGC GGTCGACCGG CTGGGACTTG ACGGCATGCT CGCATTGTGG
ACGCCGGCCG CGGGAAATTG A
 
Protein sequence
MSLDSDVIVD RRRLRRKLTF WRVVAVLIAI AALSAIGLAM SPRGRTALST SGSIARVNIE 
GLIRSDHERV EALERLENSS AEAVIVHINS PGGTTAGSEQ LYDSLVRLKA KKPLVVVVEG
LAASGGYIGA IAADHIVAQQ SSLVGSIGVL FQYPNVSELL KTIGVKVEEV KSSPLKAAPN
GYEPTSPEAR AALDALVKDS YAWFRGLVKD RRGMDDALLE KVADGRVFTG RQAIELKLID
ELGDEKTAVA WLVANKNVKK DLPVRDYKLV PRFGDLTFLR TATSLVLNAV GLSGIAHQIE
QAGVVQAVDR LGLDGMLALW TPAAGN