Gene BBta_0046 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_0046 
Symbol 
ID5153463 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp46049 
End bp47449 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content65% 
IMG OID640555076 
Product(dimethylallyl)adenosine tRNA methylthiotransferase 
Protein accessionYP_001236255 
Protein GI148251670 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[TIGR00089] RNA modification enzyme, MiaB family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.655632 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.954512 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCCGC CGCGGAAGCT GCACATCAAG TCCTATGGCT GCCAGATGAA TGTCTACGAT 
GCCCAGCGCA TGGTGGACAC GCTGGGCGCT GAGGGCTTCG TCGAGACCGC CGAGGCGGGC
GACGCCGATC TGGTGATCCT CAACACCTGC CATATCCGGG AGAAGGCCTC CGAAAAGGTC
TATTCGGAGC TCGGGCGGCT GCGGGTGGCG AAGGAGGAGG CGGCGCGGCA AGGCCGCGCG
ATGCAGATTG CGGTCGCCGG TTGTGTGGCC CAGGCCGAGG GCGCCGAGAT CGTCACCCGT
GCCCCGACCG TCGACGTCGT GGTCGGACCG CAGAGCTATC ACCATCTGCC CGAACTGCTT
GCCCGCGCCG GCCGTGGCGA GCCGGCGATC GAGACTGAGT TTCCGGCCGA GGACAAGTTC
GGCTTCCTGG CCAGGCCGAG CCGCGAGGCC ATTCGCGCCC GCGGCGTCTC GGCCTTCGTG
ACCGTGCAGG AGGGATGCGA CAAGTTCTGC ACCTTCTGCG TGGTGCCCTA TACGCGCGGC
AGCGAGATGT CGCGTCCGGT GGCGCGCATC CTCGACGAGG TGACGCGGCT GACCGAGAAC
GGCGTCCGCG AGATCACGCT GATCGGCCAG AACGTCAACG CCTATCACGG TGAAGCGCCG
GACGGCAGCA CCTGGACGCT CGGCCGCCTG CTCTACGGCA TTGCCGAGAT CCCCGGCGTG
GCGCGGATCC GCTATTCGAC CAGCCACCCC AATGACGTCG ATGACAGCCT GATCGCCGCC
CATCGCGATC TCGCATCGGT GATGCCGTTC GTACATCTGC CGGTGCAGTC CGGTTCTGAC
CGGATCCTCG GCCTGATGAA CCGTAAACAT GGTGCGTCCG ATTATCGGAA AGTTGTCGAC
CGTTTTCGCG CGGCGCGGCC GGATATTGCA TTCTCTTCGG ACTTCATCGT CGGGTTCCCG
GGCGAAACCG AGGAAGATTT TCGCGCCACC CTCGCGCTCA TCGCGCAAAT CGGCTACGCT
GCAGCCTATT CTTTCAAATA TTCGCCGCGC CCGGGCACCC CGGCGGCGGA CATGCAGGAG
ATGGTGTCAG CGACCGAGAT GGACGAGCGA TTGGAGCGCC TCCAGAGCTT GATCGACAGC
CAGCAAGCGG CCTTCAACAA GGCTGCGATC GGCACGGTCG TGGACGTGTT GTTCGAGCGG
GCCGCGCGCA AGCCCGGTCA ATTGGTGGGA CGGACGGCCT ATCTGCAGCC GGCCCATGTG
ATGGCGCCCG ACAACATCAT CGGCCAGGTC CTGCCGGTTC GAATCGACAG TCTTGAACGC
TACAGCCTGC TTGGCGAGCT TGTAGCAACA GCGGCTCCGG TTGCGGGCGC CGCCACTCCC
CTTGTGTCCA TCGGAGGCTG A
 
Protein sequence
MTPPRKLHIK SYGCQMNVYD AQRMVDTLGA EGFVETAEAG DADLVILNTC HIREKASEKV 
YSELGRLRVA KEEAARQGRA MQIAVAGCVA QAEGAEIVTR APTVDVVVGP QSYHHLPELL
ARAGRGEPAI ETEFPAEDKF GFLARPSREA IRARGVSAFV TVQEGCDKFC TFCVVPYTRG
SEMSRPVARI LDEVTRLTEN GVREITLIGQ NVNAYHGEAP DGSTWTLGRL LYGIAEIPGV
ARIRYSTSHP NDVDDSLIAA HRDLASVMPF VHLPVQSGSD RILGLMNRKH GASDYRKVVD
RFRAARPDIA FSSDFIVGFP GETEEDFRAT LALIAQIGYA AAYSFKYSPR PGTPAADMQE
MVSATEMDER LERLQSLIDS QQAAFNKAAI GTVVDVLFER AARKPGQLVG RTAYLQPAHV
MAPDNIIGQV LPVRIDSLER YSLLGELVAT AAPVAGAATP LVSIGG