Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acry_2088 |
Symbol | |
ID | 5160429 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidiphilium cryptum JF-5 |
Kingdom | Bacteria |
Replicon accession | NC_009484 |
Strand | - |
Start bp | 2298110 |
End bp | 2301637 |
Gene Length | 3528 bp |
Protein Length | 1175 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640554010 |
Product | ImcF domain-containing protein |
Protein accession | YP_001235206 |
Protein GI | 148261079 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGCAC GGCTGGTCCG CTGGCTGCTG AGCGGCGTCG GCGCCGCGAT CATCGCGGCC CTGGTCTGGT TCTTCGGCCC CTTCCTCGCC GTGCTCGCCG GCATCCTGCC GCGCGCGGCG ATCGCTGTCC TGGTGTTCGT GATCTGGCTT GCGGCCAATC TCTGGCTCGA TCGCCGCGCC CGCAAGAAGG CGGCCGCCGT CGAAGAGGCG ATCACCGAGA CCCAGGCCGA CCCCGAGGCC GGCATGCGGG CGGAGGAAGT CGCCGCGCTG GCGGACAAGA TGAAGAAGGC GCTCGGCATC CTCGCCCGGG CGCGCGGCCG GCGCGGCTTT CTCTACGAAC AGCCCTGGTA CGTCATCATC GGCCCGCCCG GCGCCGGCAA GACCACCGCG CTGCTCAATG CCGGGCTGAA CTTTCCGCTC GCCGCCGAGC TCGGCCAAGG GGCGGTCGCC GGTGTCGGCG GCACCCGCTA TTGCGACTGG TGGTTCACCG ACCAGGCGGT GATGATCGAC ACCGCCGGCC GCTACACGAC GCAGGATTCC TCGGCGTCGG TCGACCAGGC CGGCTGGCAC GGCTTCCTCG ACCTGCTGCG CCGCACCCGG CCGCGCCAGC CGCTGAACGG CGTGATCGTC GCCATCGCCC TGTCCGACAT CGCCCAGGCC GACGCCGCGG CCCGCGCCGC CCATGCGCGC GCCATCCGCG CGCGGATCAA GGAGATCAAC ACCCGCCTCG GCGTCACCGT GCCGGTCTAC GCGCTGTTCA CCAAGGCCGA CCTGATCGCC GGCTTCACCG AGTTCCATGA CGATCTCGAC ACCGCCGGCC GCGCGCAGGT CTGGGGCATG ACCTTTCCGC CCGATCGCAC GCCGGCGGGC ATGGCGGGCC GGTTCGCCGC CGAGTTCCGC GAGCTGGTCG GCCGCGTGGA AGAGCGCATG CTCGACCGCC TCGCCGCCGA ACGCAGCCCG GATCGCCGCT CGCTCATCGC CGGCTTCCCG ATGCAGGTCG CGAGCCTGCA GGCGCCGCTG GAGGCCTTCC TGAACGAGGC GTTCGCCGGC TCCCAGCTCG ATCCCGCGCC GTGGCTACGC GGGGTCTATC TCTGCTCGGG CACGCAGGAA GGCACGCCGA TCGACCGTCT GACCGGCGCG CTGGCCCGCA GCTTCGGCAT CGACCAGCGG CGCGCGCCCA GCCTGCGGCC GCAATCCGGC CGCTCCTATT TCCTTGGCCG GCTGATCGGC GAGGTGATCT TCGGCGAGGC CATGCTGGGC TCGGCGGACC GGTCCGGCGC CCGGCGCCGC CTCGCGCTGC GCGGCGCGGG GTTCGGCGCG GTCGGCCTCG TGTTCGTCGT GCTGCTCGCG GCGCTGTTCC GCAGCCATGC CGACAATGCC GCCGCCATCG CCCGCGCGCG CGCCGGGCTT GCCGCCGAAC AGAAGGTCGC GGCGCAGATC CGGCTCGATC CGGTCGCCAG CGCCGATCTG TCGCGGATCG CGCCGCTGCT GCGCGAGGCC CGCGACCTTG CCGGCGCGCC CCCCGAGCGC GGCTATCACG GTATCGGCCT CGACCAGGGC GCCTCGATCA GGGCTGCGAC CGCCGCCGTC TACCGCAACG TGCTCGACCA TGCGCTGCTG CCGCGCCTCG TGCTTCAGCT CGAGGCGGAA ATGCGCGGCG GGCTCGACCG GCCGGATTTC CTGTATCAGG CGACCCGCGT CTATCTCATG CTCGGCAATC AGGGACCGCT CGACGCCTCG CTGGTCGAGG CCTGGATGAA GCTCGACTGG CGGCGCCTCT ATCCGGGCTT CGGCCAGACC GCGTTGCGCC ATTCGCTGAT GCGGGACCTG ACCGCGCTGC TCGCCCGCCC GCTGCCGGAC GTTCCGCTGG ACGGCCAGCT GATCGCCACC GCGCGCGCGA CCTTCTCGCG CGTGCCGATC GCCGAGCGGG TCTATTCCCG CATCCGCGAT TCCGAGGCGG CGTCCCGCGT GCCGGCCTGG ACGCCGGCGG CGGCGCTGGG GGCTGCCGGA ACGCCCTATT TCGTCAACGC CACCGGCAAG CCGCTGACCG ATGGCGTGCC CGGCTTCTTC ACCAAGCGCG GCTTCTACAC CGTGCTGCTG CCGGCCCTCA CCCATGCGAC ACAGGATGTC GCCAGGGAAA GCTGGGTGCT CGGCGCACAG GACCGGATCA AGCCGGATTC GCCGCAGATG CAGTCGCTCG AGCAGGATGT GATCCGGCTC TATGACACCG CCTATGCCCG GCACTGGCAG TCGATGATCG ACGACCTCAA TATCGCGCCC CTCGGCTCCG CGGGCCAGGC CGTGCAGGCG CTCTACGTGC TTGGCTCGCC CCAATCGCCG ATGGTGCGGC TGCTGTCGTC GATGGCGGAC GAGCTTACGC TCACCAAACC CCCGAAAGAC CTTGCGAAGG CCGCCAAGGG GGCGACGGGC GCCGAGGCGA AGCTGCGGGC ACCGGCCAAG CTGAACGAAG CGGCGACGCG GCTGAAGCAG TTGCTGGGCC CGCAGGCGTC AGGCGCCCCG GCCCCGAAGC CCGGGGCGGC AATCAACGCC GAGTTCGCGC CGCTGCGCAA TTATGTGGGC AACGGCGCGG CAGGCTCTCC GCTCTCGCTG ACATTGCAAC TGATCGACCA GGTGCAGAAG CAGCTGGCAA CCCTCGCCGC CACGGCGCCC GGCGCGGCGG GCCCCGCGTC CCCCGCCGCC GGCGGCGATG CGGCCCAGCT CCTTGCCGGC GAGGCGCAGC ACGATCCGCA GCCGGTCAGC CGCTGGCTCG GCGCGATCGT CGCGACATCG AACAGCCTGC GCGGCGGCAG CGCCGCGGCG GCGGCGGCGG CGGCGTTCAA GGCGCCGGGC GGTGCCGCGG CACTCTGCGA GAAGGCGGTG ACCGGCCATT ACCCGTTCGA TGCAAGTGCC GCCTCGGGCA TTCCGCTTGC CGATTTCGCC CGTCTCTTCG CGCCGGGCGG CGTGATGGAC AATTTCTTCA ACACGCAGGT GCGGCCCTTC GTGAACATGA CCGGGCAGGT ATGGACGGTG CAGCCGGTGA ACGGCGTGGC GCCGCCGGTC AGCCAGGGGG CCGTCGCGGA ATTCCAGCGC GCGCAGGAAA TCCAGCAGAT GTTCTTCCTG GGCGGCACGC AGCCCAGCGT GCAGTTCACG GTCACGCCCG CCGGCCTCTC GGCGGGCGCG GCACAGGTCG TGCTGCAGCT TGGCGGCGTC GATGTCAGCT ACGCCCACGG CCCGACGGTG CCGACCTCGG TGAACTGGCC GGGTGCCACC GGCATGCAGA CGGCCCGGCT GATCATCACG CCGGCCGCCG GCGGCACGCC GGTCACGCTT CAGGCCAGCG GTCCCTGGGC GGTGTTTCGC CTGTTCGGCA TGGGGCGGCT CACGCGTGAC GGCAGCTCCG CCCGCTACAC CCTCACCTTC GATCAGGGGG GCATGCAGGC GCGCTTCACG CTCGAGGCGG GGTCGATCTT CAACCCGTTC GCGCCGGGCG TGCTGAACGA CTTCCGCTGC CCGAGCCTCA AAGGATGA
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Protein sequence | MSARLVRWLL SGVGAAIIAA LVWFFGPFLA VLAGILPRAA IAVLVFVIWL AANLWLDRRA RKKAAAVEEA ITETQADPEA GMRAEEVAAL ADKMKKALGI LARARGRRGF LYEQPWYVII GPPGAGKTTA LLNAGLNFPL AAELGQGAVA GVGGTRYCDW WFTDQAVMID TAGRYTTQDS SASVDQAGWH GFLDLLRRTR PRQPLNGVIV AIALSDIAQA DAAARAAHAR AIRARIKEIN TRLGVTVPVY ALFTKADLIA GFTEFHDDLD TAGRAQVWGM TFPPDRTPAG MAGRFAAEFR ELVGRVEERM LDRLAAERSP DRRSLIAGFP MQVASLQAPL EAFLNEAFAG SQLDPAPWLR GVYLCSGTQE GTPIDRLTGA LARSFGIDQR RAPSLRPQSG RSYFLGRLIG EVIFGEAMLG SADRSGARRR LALRGAGFGA VGLVFVVLLA ALFRSHADNA AAIARARAGL AAEQKVAAQI RLDPVASADL SRIAPLLREA RDLAGAPPER GYHGIGLDQG ASIRAATAAV YRNVLDHALL PRLVLQLEAE MRGGLDRPDF LYQATRVYLM LGNQGPLDAS LVEAWMKLDW RRLYPGFGQT ALRHSLMRDL TALLARPLPD VPLDGQLIAT ARATFSRVPI AERVYSRIRD SEAASRVPAW TPAAALGAAG TPYFVNATGK PLTDGVPGFF TKRGFYTVLL PALTHATQDV ARESWVLGAQ DRIKPDSPQM QSLEQDVIRL YDTAYARHWQ SMIDDLNIAP LGSAGQAVQA LYVLGSPQSP MVRLLSSMAD ELTLTKPPKD LAKAAKGATG AEAKLRAPAK LNEAATRLKQ LLGPQASGAP APKPGAAINA EFAPLRNYVG NGAAGSPLSL TLQLIDQVQK QLATLAATAP GAAGPASPAA GGDAAQLLAG EAQHDPQPVS RWLGAIVATS NSLRGGSAAA AAAAAFKAPG GAAALCEKAV TGHYPFDASA ASGIPLADFA RLFAPGGVMD NFFNTQVRPF VNMTGQVWTV QPVNGVAPPV SQGAVAEFQR AQEIQQMFFL GGTQPSVQFT VTPAGLSAGA AQVVLQLGGV DVSYAHGPTV PTSVNWPGAT GMQTARLIIT PAAGGTPVTL QASGPWAVFR LFGMGRLTRD GSSARYTLTF DQGGMQARFT LEAGSIFNPF APGVLNDFRC PSLKG
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