| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acry_1952 |
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| Symbol | rpoB |
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| ID | 5160885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidiphilium cryptum JF-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009484 |
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| Strand | - |
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| Start bp | 2139824 |
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| End bp | 2144026 |
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| Gene Length | 4203 bp |
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| Protein Length | 1400 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640553873 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001235072 |
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| Protein GI | 148260945 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCGA TTTCGGGTGG CCTGAACAAA GTTTCCTTCA CCAATCGCAA GCGCATCCGC
AAGAGCTTCG GGCGTATCCC TGAAACCACG CCGATGCCCA ATCTGATCGA CGTGCAGCGC
GCAAGCTACG ATGCGTTCCT GCAGATGCAC GTCTCGCCCG ACTCCCGCAC CAATTCCGGC
CTGCAGGAAG TCTTCAAGTC GGTTTTCCCG ATCGACGACT TCGCCGGCCG CGGCCGTCTC
GAATTCGTCT ATTACGAGCT CGAGGAGCCG AAATACGACG TCGAGGAATG CATCCAGCGC
GGCATGACCT ACGCGGCCCC GCTGAAGGTG GTGCTGCGCC TGATCGTCTG GGACGTCGAT
GAAGACACCG GCGCCCGCTC GATCCGCGAC ATCAAGGAAC AGCCCGTCTA CATGGGCGAC
ATGCCGCTGA TGACCGACAA CGGCACCTTC GTCGTGAACG GCACCGAGCG CGTCATCGTC
AGCCAGATGC ACCGCAGCCC CGGCGTGTTC TTCGACCACG ACAAGGGCAA GACCCACAGC
TCCGGCAAGT ATCTCTTCGC CGCCCGCGTC ATTCCCTATC GCGGCTCCTG GCTCGATTTC
GAGTTCGACG CCAAGGACCT CATCTATGTC CGCATCGACC GCAAGCGGAA GCTGCCGGTC
ACCACGCTGC TCTATGCGCT GGAAGGCCGC GCCACCGAGG CGCTGCGCGC CGCCCGCGAG
GCGAAGGGCG AGTCGCTGGA GATCGGAGAG ATCCGCGGCA TGGATGCCGA GGAAATCCTT
ACCTATTTCT ACGGCAAGGT GCCCTTCACC CGCACCCGGA CCAGGGACGG CGAAACCGCC
TGGGCGCGCC CCTTCGAGCC GGAGACGTTC CGCGGCGCCA AGCTGGTCGA GGACCTGGTC
GACGCCGAGA CCGGCGAGGT CGTTGCCAAG GCCGATGACA AGCTGACCGC GCGCGTCGCC
CGCCAGATCG CCGTGAAGAC CCGGACGGTC CTGGTCAGCC GCGCCGACCT GATCGGCCGC
TACGTCGCCG AGGATCTGTT CGACCCCAAC ACCGGCGAGA TCTTCGCCGA TGCCGGCGAG
GAGATCTCCG AGGCCAAGCT CAAGACCTTC GAGGATGCCG GGCTCGACGA GATCCCGACC
CTCGCGATCG ACCAGGCCAA GGGGCCCTGG ATCCGCAACA CCCTCGCCGC CGACAAGAAT
GCCAGCCGCG AGGACGCGCT GATCGACATT TACCGCGTCA TCCGCCCCGG CGAGCCGCCG
ACCTCGGAGA CCGCCGAGGC GCTGTTCCGC GGCCTGTTCT TCGATGCCGA GCGCTACGAC
CTTTCGGCCG TCGGCCGGGT GAAGATGAAC ATGCGCCTCG GCCTTGAATG CGAGGACACG
GTGCGCGTGC TGCGCAAGGA AGACATCCTG CGCACCATCC AGATCATGTG CGAGCTGAAG
GACGGCCGCG GCCAGGTCGA CGACATCGAC AATCTGGGCA ACCGCCGCGT CCGCTCGGTC
GGCGAGCTGA TGGAGAACCA GTACCGCATC GGCCTGCTGC GCATGGAGCG CGCCATCCGC
GAGCGCATGG GCTCGGTCGA TATCGACGGG GTGATGCCTC ACGACCTGAT CAACGCGAAG
CCGGCGGCCG CCGCGGTCCG CGAGTTCTTC GGCTCGTCGC AGCTTTCCCA GTTCATGGAC
CAGACCAACC CGCTCTCGGA AGTGACGCAC AAGCGCCGCC TCTCGGCCCT CGGTCCGGGC
GGCCTCACCC GCGAGCGCGC CGGCTTCGAG GTGCGCGACG TGCACCCGAC GCATTACGGC
CGCATCTGCC CGATCGAGAC GCCGGAAGGC CCGAATATCG GCCTGATCAA CTCGCTCGCC
ACTTTCGCCA AGGTGAACAA GTACGGCTTC ATCGAGACGC CCTACCGCCT CGTGAAGGAC
GGCAAGGTGC TCGACGAATA CAAGTATCTC TCGGCGATGG AGGAAGAGCG CCTCACCGTC
GCCCAGGCCG ATGCGCCGAA GCTCGCCGAC GGCACGCTGA CCGAAGACCT CGTCTCGGTC
CGCCGCAACG GCGATTTCCG CCTGGTCAAA CCCGACGAGG TCACGGCGAT CGACGTCTCG
CCGCGCCAGC TCGTCTCGGT CGCCGCGGCG CTGATTCCGT TCCTCGAGAA CGACGACGCC
AACCGCGCGC TGATGGGCTC GAACATGCAG CGCCAGGCGG TGCCGCTGAT CAAGTCCGAT
GCCCCGCTGG TCGGCACCGG CATGGAAGCG CCGGTCGCGC GCGACTCGGG GGCGACCATC
GTCGCCCGCC GCGCCGGCGT GATCGACCAG ATCGACGGCG CCCGCATCGT CGTCCGCGCC
ACGGGCGAGG ACGGCACGAC CCAGGGCGTC GACATCTACC GCCTGCGCAA GTTCATGCGC
TCCAACCAGT CCACCTGCAT CAACCAGCGC CCGCTGGTCC GCGTGGGTGA CCGTGTCGGC
GCCGGCGACA TCATCGCCGA TGGCCCGTCG ACCGAGCTCG GCGAACTCGC GCTCGGCCGC
AACGTGCTCT GCGCCTTCAT GCCCTGGAAC GGCTACAACT TCGAGGACTC CATCCTGATT
TCCGAGCGGG TCGCGCGCGA GGACATGTTC ACGTCGATCC ATATCGAGGA ATTCGAGGTC
ATGGCCCGCG ACACCAAGCT CGGCCAGGAA GAGATCACGC GCGACATCCC GAATGTCGGC
GAGGAGGCGC TCCGCAATCT CGACGAGGCG GGCATCGTCT ATATCGGCGC CGAGGTGAAC
CCCGGCGATA TCCTGGTCGG CAAGGTCACG CCGAAGGGCG AGAGCCCGAT GACGCCGGAG
GAAAAGCTGC TCCGCGCGAT CTTCGGCGAA AAGGCGTCGG ATGTGCGCGA CACCTCGCTG
AAGCTGCCGC CGGGCGTGAA CGGCACGGTG GTCGACGTGC GGGTGTTCAA CCGCCGCGGC
GTCGACAAGG ACGAGCGCGC GCTGGCGATC GAGCGCGCCG AGATCGAGCG CCTCGCCAAG
GACCGGGACG ACGAGCGGGC CATTCAGGAG CGCGCCTTCC TGAACCGCCT GCGCGAGAAG
CTGCTCGGCC AGGTCGCCGG CTCCGGCTAC AAGGGTGTGC GCTCAGGCAC CGAGATCACC
ACCGAGCTGC TCGCCGAGAT CCCGCGCGGC GCCTGGCGCA ACCTGACCGT CCAGGACGAT
CGGGTGATGG CCGAGATCGA GACGCTGAAG CGCGAGTTCG ACGCTTCGGT CCACAAGCTG
CAGCAGCGTT TCGAGAGCAA GGTCGAGAAG CTGCAGCGCG GCGACGAGAT GCCGCCCGGC
GTGATGAAGA TGGTCAAGGT CTTCATCGCG GTGAAGCGCA AGCTGCAGCC GGGCGACAAG
ATGGCCGGCC GCCATGGCAA CAAGGGTGTC GTCTCCAAGG TCGTGCCGAT CGAGGACATG
CCGTTCCTTG AAGACGGCAC GCCGGTCGAT GTCGTGCTCA ACCCGCTGGG CGTGCCCTCG
CGCATGAATG TCGGGCAGAT CCTCGAAACC CATCTCGGCT GGGCCTGCGC CAATCTCGGC
CGGCAGATCG GCGAGGCGGT CGAGGCCTAT CAGCGTGACG TCGCCGAGCG CGAGCGCCTG
CACGCGATGC TGAAGAGCGT GTATGGCGAG GAGATCTACA ACGAGCAGAT CGCCTCGATG
TCCGACGCCG AGCTGCGCGA GCTGTGCGGC AACATCCGCA AGGGCGTGCC GATCGCGACC
CCGGTGTTCG ACGGTGCCCG CATCACCGAC ATCGAGGACA TGCTGGCCAA GGCCGGCCTC
GACGTCTCCG GACAGATGAC CGTCTGCGAC GGCCGCACCG GCGAGCAGTT CGAGCGCAAG
GTGACGGTGG GCTACATGTA CATGCTCAAG CTCGGCCACA TGGTCGACGA CAAGATCCAT
GCCCGCTCGA TCGGCCCCTA CAGCCTGGTC ACCCAGCAGC CGCTGGGCGG CAAGGCGCAG
TTCGGCGGCC AGCGCTTCGG CGAGATGGAG GTCTGGGCGC TCGAGGCCTA TGGCGCGGCC
TACACGCTGC AGGAAATGCT CACCGTCAAG TCGGACGACG TCTCCGGCCG CACCAAGGTC
TACGAGGCGA TCGTGCGCGA GCAGGACAAT TTCGAGGCCG GCGTGCCCGA GAGCTTCAAC
GTTCTCACCA AGGAACTGAA GTCGCTCGGC CTGAACGTCG ATCTCAACCT GTCCGTGGAC
TGA
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| Protein sequence | MNAISGGLNK VSFTNRKRIR KSFGRIPETT PMPNLIDVQR ASYDAFLQMH VSPDSRTNSG
LQEVFKSVFP IDDFAGRGRL EFVYYELEEP KYDVEECIQR GMTYAAPLKV VLRLIVWDVD
EDTGARSIRD IKEQPVYMGD MPLMTDNGTF VVNGTERVIV SQMHRSPGVF FDHDKGKTHS
SGKYLFAARV IPYRGSWLDF EFDAKDLIYV RIDRKRKLPV TTLLYALEGR ATEALRAARE
AKGESLEIGE IRGMDAEEIL TYFYGKVPFT RTRTRDGETA WARPFEPETF RGAKLVEDLV
DAETGEVVAK ADDKLTARVA RQIAVKTRTV LVSRADLIGR YVAEDLFDPN TGEIFADAGE
EISEAKLKTF EDAGLDEIPT LAIDQAKGPW IRNTLAADKN ASREDALIDI YRVIRPGEPP
TSETAEALFR GLFFDAERYD LSAVGRVKMN MRLGLECEDT VRVLRKEDIL RTIQIMCELK
DGRGQVDDID NLGNRRVRSV GELMENQYRI GLLRMERAIR ERMGSVDIDG VMPHDLINAK
PAAAAVREFF GSSQLSQFMD QTNPLSEVTH KRRLSALGPG GLTRERAGFE VRDVHPTHYG
RICPIETPEG PNIGLINSLA TFAKVNKYGF IETPYRLVKD GKVLDEYKYL SAMEEERLTV
AQADAPKLAD GTLTEDLVSV RRNGDFRLVK PDEVTAIDVS PRQLVSVAAA LIPFLENDDA
NRALMGSNMQ RQAVPLIKSD APLVGTGMEA PVARDSGATI VARRAGVIDQ IDGARIVVRA
TGEDGTTQGV DIYRLRKFMR SNQSTCINQR PLVRVGDRVG AGDIIADGPS TELGELALGR
NVLCAFMPWN GYNFEDSILI SERVAREDMF TSIHIEEFEV MARDTKLGQE EITRDIPNVG
EEALRNLDEA GIVYIGAEVN PGDILVGKVT PKGESPMTPE EKLLRAIFGE KASDVRDTSL
KLPPGVNGTV VDVRVFNRRG VDKDERALAI ERAEIERLAK DRDDERAIQE RAFLNRLREK
LLGQVAGSGY KGVRSGTEIT TELLAEIPRG AWRNLTVQDD RVMAEIETLK REFDASVHKL
QQRFESKVEK LQRGDEMPPG VMKMVKVFIA VKRKLQPGDK MAGRHGNKGV VSKVVPIEDM
PFLEDGTPVD VVLNPLGVPS RMNVGQILET HLGWACANLG RQIGEAVEAY QRDVAERERL
HAMLKSVYGE EIYNEQIASM SDAELRELCG NIRKGVPIAT PVFDGARITD IEDMLAKAGL
DVSGQMTVCD GRTGEQFERK VTVGYMYMLK LGHMVDDKIH ARSIGPYSLV TQQPLGGKAQ
FGGQRFGEME VWALEAYGAA YTLQEMLTVK SDDVSGRTKV YEAIVREQDN FEAGVPESFN
VLTKELKSLG LNVDLNLSVD
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