Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acry_1754 |
Symbol | |
ID | 5162367 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidiphilium cryptum JF-5 |
Kingdom | Bacteria |
Replicon accession | NC_009484 |
Strand | - |
Start bp | 1934517 |
End bp | 1937951 |
Gene Length | 3435 bp |
Protein Length | 1144 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640553671 |
Product | transcription-repair coupling factor |
Protein accession | YP_001234877 |
Protein GI | 148260750 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.430393 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCTGC TCACCGTCTA CGGCGCGCCG GAAGGGTTCG ACGCCGACCT GATCGCCCGC CGCGCCGCCG AGGCGGGCAC GGTGCTGCAC ATCGCGCGCG ACGATGCCCG CCTCGCCCGG CTGGAGGACG CGCTCGCCTT CTTCGCCCCC GCCGCCGAGA TCATCCGCTT CCCCGCCTGG GACTGCCTGC CCTACGACCG CGTCTCGCCC AACCCGGCGA TCGTGGCCGA CCGCGTCGCC GCCCTGGCCC GGCTGCTGGA ACCGGCGAAG GGCACCCGCA TCGTGCTGAC CACGGTGAAC GCCGCGGTCC AGCGCACCCC GCCGCGCGCG CGCTTCGCCG ATGCCAGCCG CACCATCGCC CCCGGCGGCG CCGCCCCGCC GGACGATCTC GCCCGCTTCC TCGAACAGCG CGGCTATCAC CGCGTCGGCA CCGTCATGGA GCCGGGCGAC TTCGCCGTGC GCGGCGGCAT TTTCGATGTC TGGCCCTCCG GCGAGCCGGC GCCGGCCCGC ATCGACCTGT TCGGCGACAC GGTGGACACG CTCCGCCGCT TCGATCCCGG CACCCAGCGC AGCGGCGAGG CGCTGCCCTC GCTCACCTTC CGCCCCGCCT CCGAACTCCC GCTCGACGCC GACTCGATCA GCCGCTTCCG CACCGGCTTC CGCGAGCTGT TCGGCGCCGA GGCGCTGACC GACCCGCTCT ACGAATCGGT CTCCGAGGGC CGCCGCCATC CCGGCATGGA GCATTTCGCG CCGCTCTTCT GCGCGACGAT GGAAACCGTG TTCGACTATG CGCCCGGTGC CGCCATCAGC CTCGACCACC AGGCCGAGGA GGCCGCCGCC GCCCGCTTCG AGATGATCGC CGATCACTAC GAGGCCCGCT CCGCCCCGCC CCGCGCCGGC GAGGCGCCGT ACCGGCCGGT CGCGCCCGCG CGCCTCTATC TCGACCGCGC CGGCCTCGAT GCGCTGCTCC GCGCCCGCGG GGCAACCGTG TTCTCGCCCT TCTCCCGGCC CGAGGGCGCC GAGGGCGTGG AAGCCGGCGG CCGCCCCGGC GCCATCCTCG CCTCCGCCCA GGGCATCGCC TCGGTCTATG AGGAATTCCG CCTGCTCGCC GCCCGCTGGC GCGAGGCCGG GCGCCGCGTC GTCCTCGCCG CCTGGTCCGC CGGCTCGCGC GACCGTCTCG CCGCCCTGCT GCGCGACCAC GGCATGCGCT CGATCCCGAT CGACAACGCC GCCGAGGCCC GCATCGCCCA GGGCGACGCC GTGCTGCTCG CCGTCCTCGG TCTCGAACGC GGCTATGTCG CCGACGATCT CGCCATCGTC GCCGAGCAGG ACCTGCTCGG CCAGCGCATC GCCCGCCCGC CGCGCCGCCG CCAGCGCGCC GACCAGTTCA TCGCCGACGC TACCGAAATC GCCGAGGGCG ATCTCGTCGT GCATCAGGAT CACGGCATCG GCCGCTATGA CGGGCTGGTG ACGCTGAGCG TCGAGGGCGC GCCGCATGAC TGCCTGCGCA TCCTCTATGA TGGCGACCAG AAGCTCTTCC TGCCGGTCGA GAACATCGAC ATGCTCTCCC GCTTCGGCAG CGAGACCGCC GGCGTCGGGC TCGACCGCCT GGGCGGCGCC TCCTGGCAGG CGCGCAAGGC CAAGGCCCGC AACCGCATCC GCGACATGGC GGCCGGCCTC ATCCGCATCG CCGCCGAGCG CAAGCTGCAC GACGCCGCGA TCCTCGCCGC CGATGACGGC GCCTTCGCCG AATTCTGCGC CCGCTTCCCC TACACCGAAA CCGAGGACCA GGCTCGCGCC ATCGCCGACG TGATGGAAGA TCTCGCCGCC GGCAAGCCGA TGGACCGGCT GGTCTGCGGC GATGTCGGCT TCGGCAAGAC CGAGGTCGCG CTCCGCGCCG CCTTCATCGC CGCGATGTCC GGCGCCCAGG TCGCCGTGGT GGTGCCGACC ACGCTGCTCG CCCGCCAGCA CTACCGCCTG TTCTCCGAGC GCTTCGCCGG CCTGCCCATC CGCGTCGAGC AGCTCTCCCG CCTCGTCTCC GCCAAGGATA CCGCGAAGGT GAAGGCCGGC CTCGCCGACG GCACGGTGAA CATCGTCGTC GGCACCCATG CGCTGCTGTC GAAAACGATC GCCTTCGCCG ACCTCGCGCT GCTGATCGTC GACGAGGAGC AGCATTTCGG CGTCGCCCAC AAGGAACGGC TGAAGCAGCT CAAGGCGGAC ATCCACGTCC TCACCCTGAC CGCGACGCCG ATCCCCCGCA CCCTCCAGCT CGCGCTGACC GGCGTGCGCG ACCTCTCGCT GATCACCACC CCGCCGGTCG ACCGTCTCGC CGTGCGCACC TTCATCATGC CGTGGGACAA GCTGGTGATC CGCGAGGCCA TCGCCCGCGA GCGCTTCCGC GGCGGGCAGA TCTTCTGCGT CGTCCCGCAT ATCGAGGATA TCGACCGGAT GCGCGAGCGC CTGGCCGAGA TCGCGCCGGA CCTGCGCACC GCCACCGCCC ATGGCCGCCT GCCGCCGACC GAGATCGAGC GGGTGATGAC CGAGTTCAGC GAAGGCAAGC ACGACGTCCT GCTCGCCACC AACATCGTCG AATCCGGGCT CGACATGCCG GCGGTGAACA CGATCCTGAT CTGGCGCGCC GATCTCTTCG GCCTCGGCCA GCTCTACCAG CTGCGCGGCC GCGTCGGCCG CGGCAAGCAG CGCGGCTACG CCTATCTCAC CTGGCCCGCC TCGCACACGC TCGCCGCCTC CTCGCAGAAG CGCCTCGAAG TGATGCAGAC GCTCGACACG CTCGGCGCCG GCTTCACCCT CGCCTCGCAC GATCTCGACC TGCGCGGCGC CGGCAACCTG CTGGGCGACG AACAGTCCGG CCATATCCGC GAGGTCGGCA TCGAGCTCTA CCAGCAGATG CTGGAGGATG CGGTGGCCGA ACTGCGCGCG GCCGGCGGCA GCGAATCGCG CGAGGCCGCG CGGGACTGGA CGCCGAATAT CAGCCTCGGC CTGCCCGTCC TCATCCCCGA AGCCTATGTG GCCGACCTGC CGGTCCGCCT CGGCCTCTAC CGCCGCATCG GCGGACTCGC GACCGATGCC GAGAGCGAGG CGCTCGCCGC CGAGCTGGTC GACCGTTTCG GCCCGATGCC CGAGGAGGTG GAAAACCTCC TCGCCACGGT GGCGCTGAAG CGCGCCTGCC GCGCCGTCGG CGTCGAGAAG CTGGAGGCCG GGCCGAAGGG CATGGTCGTC GCCTTCCGCG GCAACGCATT CGCCAATCCC GGCGGCCTCG TCGCCTGGCT CGCCACCCGC GCCGGCCTGC TCCGCCTGCG CCCGGACCAC AAGCTGGTCA TGGTCCGCGA GATGGACGTG AAGGCCCGCC TCGCCGCGGC CCGCGACATA ATATCGAACC TGCAACGCAT TATCGACCAG TCGAAGGCGG CATGA
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Protein sequence | MSLLTVYGAP EGFDADLIAR RAAEAGTVLH IARDDARLAR LEDALAFFAP AAEIIRFPAW DCLPYDRVSP NPAIVADRVA ALARLLEPAK GTRIVLTTVN AAVQRTPPRA RFADASRTIA PGGAAPPDDL ARFLEQRGYH RVGTVMEPGD FAVRGGIFDV WPSGEPAPAR IDLFGDTVDT LRRFDPGTQR SGEALPSLTF RPASELPLDA DSISRFRTGF RELFGAEALT DPLYESVSEG RRHPGMEHFA PLFCATMETV FDYAPGAAIS LDHQAEEAAA ARFEMIADHY EARSAPPRAG EAPYRPVAPA RLYLDRAGLD ALLRARGATV FSPFSRPEGA EGVEAGGRPG AILASAQGIA SVYEEFRLLA ARWREAGRRV VLAAWSAGSR DRLAALLRDH GMRSIPIDNA AEARIAQGDA VLLAVLGLER GYVADDLAIV AEQDLLGQRI ARPPRRRQRA DQFIADATEI AEGDLVVHQD HGIGRYDGLV TLSVEGAPHD CLRILYDGDQ KLFLPVENID MLSRFGSETA GVGLDRLGGA SWQARKAKAR NRIRDMAAGL IRIAAERKLH DAAILAADDG AFAEFCARFP YTETEDQARA IADVMEDLAA GKPMDRLVCG DVGFGKTEVA LRAAFIAAMS GAQVAVVVPT TLLARQHYRL FSERFAGLPI RVEQLSRLVS AKDTAKVKAG LADGTVNIVV GTHALLSKTI AFADLALLIV DEEQHFGVAH KERLKQLKAD IHVLTLTATP IPRTLQLALT GVRDLSLITT PPVDRLAVRT FIMPWDKLVI REAIARERFR GGQIFCVVPH IEDIDRMRER LAEIAPDLRT ATAHGRLPPT EIERVMTEFS EGKHDVLLAT NIVESGLDMP AVNTILIWRA DLFGLGQLYQ LRGRVGRGKQ RGYAYLTWPA SHTLAASSQK RLEVMQTLDT LGAGFTLASH DLDLRGAGNL LGDEQSGHIR EVGIELYQQM LEDAVAELRA AGGSESREAA RDWTPNISLG LPVLIPEAYV ADLPVRLGLY RRIGGLATDA ESEALAAELV DRFGPMPEEV ENLLATVALK RACRAVGVEK LEAGPKGMVV AFRGNAFANP GGLVAWLATR AGLLRLRPDH KLVMVREMDV KARLAAARDI ISNLQRIIDQ SKAA
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