Gene Gura_4005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGura_4005 
Symbol 
ID5164051 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter uraniireducens Rf4 
KingdomBacteria 
Replicon accessionNC_009483 
Strand
Start bp4658396 
End bp4659712 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content55% 
IMG OID640551484 
Productresponse regulator receiver modulated diguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_001232722 
Protein GI148266016 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000169909 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCTCG GAATAAACGG AAAGTGTATG AGTATACCAC TAAGGGTGTT AATTGTTGAA 
GACTCTCCTG ATGATGCTGA ACTCCTCTTG CGGGAATTGC GGCACGGTGG ATTCGATCCG
TCTTTCCAGC GGGTCGATAC TGCGGAGGGC ATGATGTCAG CCCTTGAAGA TCAGACGTGG
GACATTGTCA TTACAGACTA CGTCATGCCG CACTTCAACG GCATGGCCGC CTTGAACTTG
CTTCAGGAGA AGGGGCTCGA CCTGCCGTGC ATAATCGTCT CCGGTAAAAT CGGCGAGGAT
GCAGCGGTGG AAGCCATGCG CGGCGGCGCC CACGATTATT TTGTCAAGGG GCAGCTGGCG
CGCCTTATAC CCGCCATCAA ACGAGAGCTG GTCGAAGCAA GGATACGACA GGAGAGGAAG
CGGGACGAAG AAATTCTGCG GCAGCAACTG GCAGCCATGG AAAGTTCACT GGACGGCATG
GCGACCATCA ACCGTAGCGG CGAATTCATC TATCTTAATC ACGCCCATGC CGAAATCCAT
GGATACGACA CCCCGGAGGA ACTCATCGGC AAAACATGGA AGGGCCTCTA TGAGGAAAGA
GAGGTCAGGA GGTTTGAAAA CGAGATATTG CCGATCCTAT GCCTGAACGG CAAATGGCGG
GGAGAGGCAA CGGGAAAGAA GAGGAACGGG ACTCCTTTCC CCGAGGAGAT ATCCCTTGCC
CTCATAGAGG GAGGAGGGAT TGCCTACATC GTCCGGGACA TTTCCGAGAG GAAGGAGGCA
GAAGAGAAGC TCCGGTACAT GAGCACCCAC GATGCACTCA CCGGCCTCTA CAATCGGGCC
TATTTCGATG AAGAACTGGC GAGGCTGGAA AAGGGGCGAC AGTTCCCGAT CAGCATCGTG
ATGTCGGACG TGGACGGCTT GAAGGCGGTG AATGACAAGA TGGGGCATGC ACATGGAGAT
GCATTACTGA AACAGGCCGC CAAGGCGTTG AAGGAAGTCT TTCGGGCTGA AGATGTAGTA
GCCAGGATTG GAGGCGACGA GTTTGCCGCG CTACTCCCCA GTACCGACGC TGCAGCCGTC
AAGGAAATCA TAAATCGGCT GAAAAAGAGC CTGGCCCACC ACAACGAAGC CAGCTCTGCA
AGCTCTGCCC CTCCCCTGAG CCTGTCAGTT GGAGTAGCCA TTGCAGAGAA CGGAGAAAAA
CTGATCGATA CCTGGAGATT GGCGGATGCA CGCATGTACC TTGACAAACG ATCGAGAACC
AGCAGAAGCA CGACTAAAGG CCCGCAAGCA GAACCGCCAC GGAAGACCAA GCCCTGA
 
Protein sequence
MRLGINGKCM SIPLRVLIVE DSPDDAELLL RELRHGGFDP SFQRVDTAEG MMSALEDQTW 
DIVITDYVMP HFNGMAALNL LQEKGLDLPC IIVSGKIGED AAVEAMRGGA HDYFVKGQLA
RLIPAIKREL VEARIRQERK RDEEILRQQL AAMESSLDGM ATINRSGEFI YLNHAHAEIH
GYDTPEELIG KTWKGLYEER EVRRFENEIL PILCLNGKWR GEATGKKRNG TPFPEEISLA
LIEGGGIAYI VRDISERKEA EEKLRYMSTH DALTGLYNRA YFDEELARLE KGRQFPISIV
MSDVDGLKAV NDKMGHAHGD ALLKQAAKAL KEVFRAEDVV ARIGGDEFAA LLPSTDAAAV
KEIINRLKKS LAHHNEASSA SSAPPLSLSV GVAIAENGEK LIDTWRLADA RMYLDKRSRT
SRSTTKGPQA EPPRKTKP